miRNA display CGI


Results 1 - 6 of 6 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12363 5' -57.7 NC_003324.1 + 25973 0.67 0.465751
Target:  5'- uGGUgccUUCGGCGC---CCCAGACCa-- -3'
miRNA:   3'- uCCA---AAGCCGCGgacGGGUCUGGaaa -5'
12363 5' -57.7 NC_003324.1 + 28792 1.06 0.000845
Target:  5'- cAGGUUUCGGCGCCUGCCCAGACCUUUa -3'
miRNA:   3'- -UCCAAAGCCGCGGACGGGUCUGGAAA- -5'
12363 5' -57.7 NC_003324.1 + 30473 0.67 0.475821
Target:  5'- cGGGUcgaaUCGGCGCC-GCCgagCAGGCCc-- -3'
miRNA:   3'- -UCCAa---AGCCGCGGaCGG---GUCUGGaaa -5'
12363 5' -57.7 NC_003324.1 + 35685 0.66 0.570616
Target:  5'- gGGGUuuucUUCGGCcugauccgggucGCUcaUGCCCGuGACCUUg -3'
miRNA:   3'- -UCCA----AAGCCG------------CGG--ACGGGU-CUGGAAa -5'
12363 5' -57.7 NC_003324.1 + 38985 0.67 0.506656
Target:  5'- gAGGcgcUGGCGCUUGCCgAGGCUg-- -3'
miRNA:   3'- -UCCaaaGCCGCGGACGGgUCUGGaaa -5'
12363 5' -57.7 NC_003324.1 + 40158 0.7 0.321932
Target:  5'- cGGaUUUCGGCGCCgcguuccGgCCAGACCc-- -3'
miRNA:   3'- uCC-AAAGCCGCGGa------CgGGUCUGGaaa -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.