miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12364 3' -56 NC_003324.1 + 29389 1.09 0.000757
Target:  5'- cUGACGCCAGAUCAGGUCGAGCAGCAGg -3'
miRNA:   3'- -ACUGCGGUCUAGUCCAGCUCGUCGUC- -5'
12364 3' -56 NC_003324.1 + 47942 0.78 0.136923
Target:  5'- cUGACGCCGG-UCAGGUaCGguuucAGCGGCAGc -3'
miRNA:   3'- -ACUGCGGUCuAGUCCA-GC-----UCGUCGUC- -5'
12364 3' -56 NC_003324.1 + 5453 0.75 0.223098
Target:  5'- cGACGCUGGGUCAGG-CaGGCGGCGu -3'
miRNA:   3'- aCUGCGGUCUAGUCCaGcUCGUCGUc -5'
12364 3' -56 NC_003324.1 + 41868 0.72 0.334765
Target:  5'- cGucuCGCCGG-UCAuGG-CGAGCAGCAGu -3'
miRNA:   3'- aCu--GCGGUCuAGU-CCaGCUCGUCGUC- -5'
12364 3' -56 NC_003324.1 + 43832 0.7 0.413572
Target:  5'- aUGGcCGCCGGAUCGuuGUCGAugcccccgauGCAGCGGa -3'
miRNA:   3'- -ACU-GCGGUCUAGUc-CAGCU----------CGUCGUC- -5'
12364 3' -56 NC_003324.1 + 20888 0.7 0.42396
Target:  5'- gGGCGCCGGA-CAGGgugauaucgaacucgCGGGUAuGCAGg -3'
miRNA:   3'- aCUGCGGUCUaGUCCa--------------GCUCGU-CGUC- -5'
12364 3' -56 NC_003324.1 + 38247 0.7 0.403342
Target:  5'- -aGCGCCGGAaugccgaucgccaUCAGGUCGGgagugcGCGGCAc -3'
miRNA:   3'- acUGCGGUCU-------------AGUCCAGCU------CGUCGUc -5'
12364 3' -56 NC_003324.1 + 4539 0.69 0.492461
Target:  5'- cGGCGCCuGaAUCGGGUU--GCAGCAu -3'
miRNA:   3'- aCUGCGGuC-UAGUCCAGcuCGUCGUc -5'
12364 3' -56 NC_003324.1 + 18823 0.69 0.499701
Target:  5'- cGGCGUCagcaacgagcugauGGAUCAGGUauGGCAGCGu -3'
miRNA:   3'- aCUGCGG--------------UCUAGUCCAgcUCGUCGUc -5'
12364 3' -56 NC_003324.1 + 25160 0.69 0.492461
Target:  5'- aGACGCCAG-UCGGGuUUGAGaAGCuGa -3'
miRNA:   3'- aCUGCGGUCuAGUCC-AGCUCgUCGuC- -5'
12364 3' -56 NC_003324.1 + 33752 0.68 0.56671
Target:  5'- uUGGCGgCAGcgCAGGcguaUCGAGC-GUAGa -3'
miRNA:   3'- -ACUGCgGUCuaGUCC----AGCUCGuCGUC- -5'
12364 3' -56 NC_003324.1 + 18759 0.68 0.534427
Target:  5'- cUGACGCCGGAgccca-CGAGCAGCu- -3'
miRNA:   3'- -ACUGCGGUCUaguccaGCUCGUCGuc -5'
12364 3' -56 NC_003324.1 + 52797 0.68 0.56671
Target:  5'- gGACGUguGGUCaAGGUCGAGUucuGGUc- -3'
miRNA:   3'- aCUGCGguCUAG-UCCAGCUCG---UCGuc -5'
12364 3' -56 NC_003324.1 + 35031 0.68 0.56671
Target:  5'- cGAUGCCGauGAUCAGGgCG-GC-GCAGa -3'
miRNA:   3'- aCUGCGGU--CUAGUCCaGCuCGuCGUC- -5'
12364 3' -56 NC_003324.1 + 51251 0.68 0.56671
Target:  5'- --cCGCUc-GUCAGGUUGAcGCGGCAGg -3'
miRNA:   3'- acuGCGGucUAGUCCAGCU-CGUCGUC- -5'
12364 3' -56 NC_003324.1 + 30318 0.68 0.545122
Target:  5'- cGACGCCGGAgaUCAGGaaggccugCGAuGCuGCAu -3'
miRNA:   3'- aCUGCGGUCU--AGUCCa-------GCU-CGuCGUc -5'
12364 3' -56 NC_003324.1 + 43473 0.68 0.513268
Target:  5'- cGACugcgGUCAGAUCggcgguuuGGGUCGAGCcGCAa -3'
miRNA:   3'- aCUG----CGGUCUAG--------UCCAGCUCGuCGUc -5'
12364 3' -56 NC_003324.1 + 7556 0.68 0.513268
Target:  5'- aGACcuGCCccgAGGUCGGGauuuuggcucUCGGGCAGCAc -3'
miRNA:   3'- aCUG--CGG---UCUAGUCC----------AGCUCGUCGUc -5'
12364 3' -56 NC_003324.1 + 42425 0.67 0.592889
Target:  5'- -aGCGCCAGA-CAGGaagCGAGCacccgucaccgaaucGGCGGu -3'
miRNA:   3'- acUGCGGUCUaGUCCa--GCUCG---------------UCGUC- -5'
12364 3' -56 NC_003324.1 + 24599 0.66 0.654496
Target:  5'- gGACccuGCCGGAaaaugUCAuGGUCGAGCccggggcGCAGa -3'
miRNA:   3'- aCUG---CGGUCU-----AGU-CCAGCUCGu------CGUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.