miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12364 5' -62.3 NC_003324.1 + 34433 0.78 0.059
Target:  5'- --aCGuuGAggcuuaCGAGCGCGAGCUCGGCa -3'
miRNA:   3'- uagGCggCUa-----GCUCGCGCUCGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 32108 0.66 0.388561
Target:  5'- -gUCGCCGGUgaggcCGAGUGCcuuggucuccgccucGGGCCgGGCc -3'
miRNA:   3'- uaGGCGGCUA-----GCUCGCG---------------CUCGGgCCG- -5'
12364 5' -62.3 NC_003324.1 + 29666 0.66 0.352086
Target:  5'- uUCUGcCCGAggaaUCGAGCGaCGAGgCCUugaGGCc -3'
miRNA:   3'- uAGGC-GGCU----AGCUCGC-GCUC-GGG---CCG- -5'
12364 5' -62.3 NC_003324.1 + 29350 1.09 0.000222
Target:  5'- aAUCCGCCGAUCGAGCGCGAGCCCGGCg -3'
miRNA:   3'- -UAGGCGGCUAGCUCGCGCUCGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 26133 0.66 0.352086
Target:  5'- ---aGCCGcgcUUGAGCuaGAGCgCCGGCa -3'
miRNA:   3'- uaggCGGCu--AGCUCGcgCUCG-GGCCG- -5'
12364 5' -62.3 NC_003324.1 + 24276 0.67 0.313666
Target:  5'- uUCuCGUCGAUCuGGGCacgGCgGAGCuuGGCg -3'
miRNA:   3'- uAG-GCGGCUAG-CUCG---CG-CUCGggCCG- -5'
12364 5' -62.3 NC_003324.1 + 21401 0.67 0.344142
Target:  5'- cGUCCGCgcAUCGAGCGUGuuCuuGGUg -3'
miRNA:   3'- -UAGGCGgcUAGCUCGCGCucGggCCG- -5'
12364 5' -62.3 NC_003324.1 + 20551 0.7 0.201305
Target:  5'- cUCCGCgaugcggCGAUCGAGCGCGuucucaaugacGGCCgGaGCu -3'
miRNA:   3'- uAGGCG-------GCUAGCUCGCGC-----------UCGGgC-CG- -5'
12364 5' -62.3 NC_003324.1 + 20524 0.69 0.223236
Target:  5'- -cCCGCCGAcCGcaAGCGCccaucAGCgCCGGCa -3'
miRNA:   3'- uaGGCGGCUaGC--UCGCGc----UCG-GGCCG- -5'
12364 5' -62.3 NC_003324.1 + 19926 0.67 0.328643
Target:  5'- aAUUCGCCGGUCuGAuaGaCGAGCCCaGUc -3'
miRNA:   3'- -UAGGCGGCUAG-CUcgC-GCUCGGGcCG- -5'
12364 5' -62.3 NC_003324.1 + 18855 0.69 0.252695
Target:  5'- -gUUGCCGAgaUCGAGgagcugcuCGUGGGCuCCGGCg -3'
miRNA:   3'- uaGGCGGCU--AGCUC--------GCGCUCG-GGCCG- -5'
12364 5' -62.3 NC_003324.1 + 18272 0.67 0.344142
Target:  5'- -aCCGCUGAcggaaUCGGccgacGCGCGGGCaaucgcugccCCGGCc -3'
miRNA:   3'- uaGGCGGCU-----AGCU-----CGCGCUCG----------GGCCG- -5'
12364 5' -62.3 NC_003324.1 + 17719 0.73 0.126285
Target:  5'- -gUCGUCGAuauccUCGGGCcCGAGCUCGGCg -3'
miRNA:   3'- uaGGCGGCU-----AGCUCGcGCUCGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 17430 0.69 0.252695
Target:  5'- -cUCGUCGGUCauGAcGCG-GAGCCCGGUg -3'
miRNA:   3'- uaGGCGGCUAG--CU-CGCgCUCGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 16522 0.67 0.344142
Target:  5'- ---aGCgGAUCGGccuGUGCGuGCUCGGCg -3'
miRNA:   3'- uaggCGgCUAGCU---CGCGCuCGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 16241 0.66 0.385144
Target:  5'- -cCCGCC--UCGGuGCcaGCGAuGCCUGGCg -3'
miRNA:   3'- uaGGCGGcuAGCU-CG--CGCU-CGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 14812 0.69 0.258958
Target:  5'- -aUUGCUGAUUGAGUGuCGAGCCCa-- -3'
miRNA:   3'- uaGGCGGCUAGCUCGC-GCUCGGGccg -5'
12364 5' -62.3 NC_003324.1 + 14533 0.73 0.124284
Target:  5'- gGUCCGCCGAUgcuuggacgccggcaUGGGCccaGAGCCgGGCg -3'
miRNA:   3'- -UAGGCGGCUA---------------GCUCGcg-CUCGGgCCG- -5'
12364 5' -62.3 NC_003324.1 + 14072 0.66 0.384293
Target:  5'- gAUCCGCaGAUCGgcaaagcAGCGCucaaggaagcgGAGaCCGGCg -3'
miRNA:   3'- -UAGGCGgCUAGC-------UCGCG-----------CUCgGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 12100 0.69 0.252695
Target:  5'- gGUCUGUaccUGAUCgcgGAGCGCGcGGCCuCGGCc -3'
miRNA:   3'- -UAGGCG---GCUAG---CUCGCGC-UCGG-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.