miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12365 3' -57 NC_003324.1 + 27261 0.68 0.4626
Target:  5'- --aGCGGCCgaACA-CGGCUUCCGCGUu -3'
miRNA:   3'- ccgUGUCGGg-UGUcGUCGAAGGUGCG- -5'
12365 3' -57 NC_003324.1 + 27646 0.66 0.630662
Target:  5'- uGCGCgaaaauaugcgugAGCCgGCAGCcgAGCccgaaacaggUCCGCGCg -3'
miRNA:   3'- cCGUG-------------UCGGgUGUCG--UCGa---------AGGUGCG- -5'
12365 3' -57 NC_003324.1 + 28722 0.66 0.620826
Target:  5'- aGGCGCcgaaaCCUGCucuGCAGUUcCCGCGCc -3'
miRNA:   3'- -CCGUGuc---GGGUGu--CGUCGAaGGUGCG- -5'
12365 3' -57 NC_003324.1 + 28811 0.68 0.48265
Target:  5'- cGGCGCGGgaaCUGCAGagcaGGUUUCgGCGCc -3'
miRNA:   3'- -CCGUGUCg--GGUGUCg---UCGAAGgUGCG- -5'
12365 3' -57 NC_003324.1 + 29327 0.67 0.577298
Target:  5'- cGGCGaugcaGGCCCgaACAGCcGCcgUCUugGUg -3'
miRNA:   3'- -CCGUg----UCGGG--UGUCGuCGa-AGGugCG- -5'
12365 3' -57 NC_003324.1 + 29924 1.13 0.000337
Target:  5'- cGGCACAGCCCACAGCAGCUUCCACGCc -3'
miRNA:   3'- -CCGUGUCGGGUGUCGUCGAAGGUGCG- -5'
12365 3' -57 NC_003324.1 + 29929 0.79 0.101141
Target:  5'- cGGCGCGGCCCACGGUccggacgggcgaggGGCgUCCuGCGUa -3'
miRNA:   3'- -CCGUGUCGGGUGUCG--------------UCGaAGG-UGCG- -5'
12365 3' -57 NC_003324.1 + 30077 0.67 0.545088
Target:  5'- -aCACcGgCCGCuGCGGCUUCCucgACGCc -3'
miRNA:   3'- ccGUGuCgGGUGuCGUCGAAGG---UGCG- -5'
12365 3' -57 NC_003324.1 + 30426 0.67 0.577298
Target:  5'- gGGCcaGCuGCUCGC-GCGGgaUCUGCGCa -3'
miRNA:   3'- -CCG--UGuCGGGUGuCGUCgaAGGUGCG- -5'
12365 3' -57 NC_003324.1 + 30555 0.66 0.631755
Target:  5'- cGCGCuGCUCuacucCAGCGGCgaUCAUGCu -3'
miRNA:   3'- cCGUGuCGGGu----GUCGUCGaaGGUGCG- -5'
12365 3' -57 NC_003324.1 + 30758 0.68 0.48265
Target:  5'- uGGUuuGGCCCGgcGUGGCgcgaUCCGCGCa -3'
miRNA:   3'- -CCGugUCGGGUguCGUCGa---AGGUGCG- -5'
12365 3' -57 NC_003324.1 + 31188 0.69 0.414493
Target:  5'- aGCAgCAGCCgaGCAGCAGCgcauugCCGCa- -3'
miRNA:   3'- cCGU-GUCGGg-UGUCGUCGaa----GGUGcg -5'
12365 3' -57 NC_003324.1 + 31243 0.74 0.207805
Target:  5'- uGGCGCAGgCCG-GGCAGCU-CCGCGa -3'
miRNA:   3'- -CCGUGUCgGGUgUCGUCGAaGGUGCg -5'
12365 3' -57 NC_003324.1 + 31319 0.67 0.577298
Target:  5'- aGUGCGGCCgGCGGC-GCUggCgCugGCg -3'
miRNA:   3'- cCGUGUCGGgUGUCGuCGAa-G-GugCG- -5'
12365 3' -57 NC_003324.1 + 31515 0.68 0.466575
Target:  5'- uGGuCGCAGUCCGCcGUccucgucgugagaauGGCcgCCACGCg -3'
miRNA:   3'- -CC-GUGUCGGGUGuCG---------------UCGaaGGUGCG- -5'
12365 3' -57 NC_003324.1 + 32808 0.69 0.440096
Target:  5'- cGGCGgGcuuuguuuuuGCCCACacucgaauuauaacGGCAGUgucgUUCCGCGCa -3'
miRNA:   3'- -CCGUgU----------CGGGUG--------------UCGUCG----AAGGUGCG- -5'
12365 3' -57 NC_003324.1 + 35372 0.69 0.442996
Target:  5'- cGGCcugugcugcuGCAGCCUGCu-CGGCcgCCGCGCg -3'
miRNA:   3'- -CCG----------UGUCGGGUGucGUCGaaGGUGCG- -5'
12365 3' -57 NC_003324.1 + 35407 0.7 0.369586
Target:  5'- aGCaACAGCaaCCGCAGCAGC--CgGCGCa -3'
miRNA:   3'- cCG-UGUCG--GGUGUCGUCGaaGgUGCG- -5'
12365 3' -57 NC_003324.1 + 35458 0.67 0.545088
Target:  5'- cGGCcgaGCAGgCUGCAGCAGCacaggccgaCCAgGCa -3'
miRNA:   3'- -CCG---UGUCgGGUGUCGUCGaa-------GGUgCG- -5'
12365 3' -57 NC_003324.1 + 39182 0.71 0.344286
Target:  5'- uGGCGCAG-CCACGGCGGCaaCCGaucauagGCg -3'
miRNA:   3'- -CCGUGUCgGGUGUCGUCGaaGGUg------CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.