miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12365 5' -55.5 NC_003324.1 + 48354 0.66 0.728728
Target:  5'- cUGCUgCAGggGgUGGaaaauaggccCGCGugUGUGCu -3'
miRNA:   3'- aGCGG-GUCuuCaACC----------GCGCugACACG- -5'
12365 5' -55.5 NC_003324.1 + 23268 0.66 0.696665
Target:  5'- cUUGCCCGGAAGgcucagauGCGCGccgucauaGCUGcGCa -3'
miRNA:   3'- -AGCGGGUCUUCaac-----CGCGC--------UGACaCG- -5'
12365 5' -55.5 NC_003324.1 + 17163 0.66 0.685838
Target:  5'- -gGCCCAGcgauugacGAGgcgcUGGCGCGuCUGUcggacGCg -3'
miRNA:   3'- agCGGGUC--------UUCa---ACCGCGCuGACA-----CG- -5'
12365 5' -55.5 NC_003324.1 + 30745 0.67 0.672779
Target:  5'- cUGCUCGGGAGUgacggaagcacgGGCGCGGucCUGcGCc -3'
miRNA:   3'- aGCGGGUCUUCAa-----------CCGCGCU--GACaCG- -5'
12365 5' -55.5 NC_003324.1 + 14577 0.67 0.662948
Target:  5'- cCGCgCAGu-GUUGGCugcaccggcuuccGCGACgGUGCc -3'
miRNA:   3'- aGCGgGUCuuCAACCG-------------CGCUGaCACG- -5'
12365 5' -55.5 NC_003324.1 + 11291 0.67 0.63115
Target:  5'- aUGCCaCGGggGUcgccucauuUGGCGUGACcGagGCg -3'
miRNA:   3'- aGCGG-GUCuuCA---------ACCGCGCUGaCa-CG- -5'
12365 5' -55.5 NC_003324.1 + 21929 0.67 0.620174
Target:  5'- cCGCCgAGGAGgcccggcuGCGCGaACUGaUGCa -3'
miRNA:   3'- aGCGGgUCUUCaac-----CGCGC-UGAC-ACG- -5'
12365 5' -55.5 NC_003324.1 + 39780 0.68 0.576468
Target:  5'- -gGCCgGGcacaUGGCGCGAC-GUGCg -3'
miRNA:   3'- agCGGgUCuucaACCGCGCUGaCACG- -5'
12365 5' -55.5 NC_003324.1 + 37135 0.68 0.565634
Target:  5'- uUCGgCCA-AGGUUGGCGuCGGCUGg-- -3'
miRNA:   3'- -AGCgGGUcUUCAACCGC-GCUGACacg -5'
12365 5' -55.5 NC_003324.1 + 41644 0.69 0.52713
Target:  5'- cUCGCCCGcucucGucGgcGGCGCGACguagccgacgcgcacUGUGCc -3'
miRNA:   3'- -AGCGGGU-----CuuCaaCCGCGCUG---------------ACACG- -5'
12365 5' -55.5 NC_003324.1 + 7168 0.72 0.385739
Target:  5'- uUCGCgCCAacAGUUGGUGCG-CUG-GCa -3'
miRNA:   3'- -AGCG-GGUcuUCAACCGCGCuGACaCG- -5'
12365 5' -55.5 NC_003324.1 + 22865 0.72 0.385739
Target:  5'- gUCGCCCAgcucacGAAG-UGGCGCGACa---- -3'
miRNA:   3'- -AGCGGGU------CUUCaACCGCGCUGacacg -5'
12365 5' -55.5 NC_003324.1 + 9731 0.72 0.376875
Target:  5'- cCGCCCAGcgcGUUGGCGUugccGGCgGUGUu -3'
miRNA:   3'- aGCGGGUCuu-CAACCGCG----CUGaCACG- -5'
12365 5' -55.5 NC_003324.1 + 30611 0.75 0.247845
Target:  5'- cCGCCCGGAAGcaUGGUGaUGACaGUGCc -3'
miRNA:   3'- aGCGGGUCUUCa-ACCGC-GCUGaCACG- -5'
12365 5' -55.5 NC_003324.1 + 29888 1.13 0.000509
Target:  5'- aUCGCCCAGAAGUUGGCGCGACUGUGCg -3'
miRNA:   3'- -AGCGGGUCUUCAACCGCGCUGACACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.