miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12368 3' -62.4 NC_003324.1 + 31749 0.66 0.358379
Target:  5'- -cCCCGAUGCcuugaACUGGGGGCGCcaACg -3'
miRNA:   3'- caGGGCUGUGc----UGGCCCCCGCGacUG- -5'
12368 3' -62.4 NC_003324.1 + 29453 0.66 0.350355
Target:  5'- cUCCCccucgacgauGACACGGCCGccuggcugcGGGCGCgucgGGCg -3'
miRNA:   3'- cAGGG----------CUGUGCUGGCc--------CCCGCGa---CUG- -5'
12368 3' -62.4 NC_003324.1 + 20627 0.67 0.34246
Target:  5'- -aCCCGAUcCGACUGuugccGGCGCUGAUg -3'
miRNA:   3'- caGGGCUGuGCUGGCcc---CCGCGACUG- -5'
12368 3' -62.4 NC_003324.1 + 36749 0.67 0.319552
Target:  5'- -aUCCGAUGCGAggcCCGuGGaGCGCUGGCc -3'
miRNA:   3'- caGGGCUGUGCU---GGCcCC-CGCGACUG- -5'
12368 3' -62.4 NC_003324.1 + 53365 0.67 0.312176
Target:  5'- cUCaaGcCGCGACCGGcGGGCGC-GAUc -3'
miRNA:   3'- cAGggCuGUGCUGGCC-CCCGCGaCUG- -5'
12368 3' -62.4 NC_003324.1 + 7327 0.68 0.270636
Target:  5'- cGUUCCG-CGCG-CCGaGGGCacGCUGACg -3'
miRNA:   3'- -CAGGGCuGUGCuGGCcCCCG--CGACUG- -5'
12368 3' -62.4 NC_003324.1 + 14582 0.68 0.264162
Target:  5'- cUgCCGGCgcaaGCGGCCGGcGGCGCaGGCg -3'
miRNA:   3'- cAgGGCUG----UGCUGGCCcCCGCGaCUG- -5'
12368 3' -62.4 NC_003324.1 + 31853 0.68 0.264162
Target:  5'- -gCCCGAagaGGCCGGcaGGCGUUGGCg -3'
miRNA:   3'- caGGGCUgugCUGGCCc-CCGCGACUG- -5'
12368 3' -62.4 NC_003324.1 + 15956 0.69 0.257813
Target:  5'- --aUCGACAaGG-CGGGGGCGUUGGCg -3'
miRNA:   3'- cagGGCUGUgCUgGCCCCCGCGACUG- -5'
12368 3' -62.4 NC_003324.1 + 44296 0.69 0.25159
Target:  5'- uGUCUCGACGa-ACCGGGcGCGgUGGCg -3'
miRNA:   3'- -CAGGGCUGUgcUGGCCCcCGCgACUG- -5'
12368 3' -62.4 NC_003324.1 + 11842 0.69 0.25159
Target:  5'- uGUCCUG-CGCGACCGGGccgggcacGGCaUUGACc -3'
miRNA:   3'- -CAGGGCuGUGCUGGCCC--------CCGcGACUG- -5'
12368 3' -62.4 NC_003324.1 + 25008 0.7 0.206179
Target:  5'- aUCgaGACacuGCGACCGGGcGGCguGCUGGCg -3'
miRNA:   3'- cAGggCUG---UGCUGGCCC-CCG--CGACUG- -5'
12368 3' -62.4 NC_003324.1 + 38337 0.71 0.181536
Target:  5'- cUCCCGACcugaugGCGAUCGGcauuccGGCGCUGAa -3'
miRNA:   3'- cAGGGCUG------UGCUGGCCc-----CCGCGACUg -5'
12368 3' -62.4 NC_003324.1 + 31341 0.71 0.174219
Target:  5'- cGUCgCCGcCgcaaaaacgcgcaguGCGGCCGGcGGCGCUGGCg -3'
miRNA:   3'- -CAG-GGCuG---------------UGCUGGCCcCCGCGACUG- -5'
12368 3' -62.4 NC_003324.1 + 38336 0.72 0.147521
Target:  5'- cGUCUCGAuCACGAgggcaCCGGGGcgGCGCUGGu -3'
miRNA:   3'- -CAGGGCU-GUGCU-----GGCCCC--CGCGACUg -5'
12368 3' -62.4 NC_003324.1 + 47091 0.73 0.132782
Target:  5'- -cCCCGACACGugCGGcGaGGUGC-GGCa -3'
miRNA:   3'- caGGGCUGUGCugGCC-C-CCGCGaCUG- -5'
12368 3' -62.4 NC_003324.1 + 32335 1.08 0.000291
Target:  5'- cGUCCCGACACGACCGGGGGCGCUGACc -3'
miRNA:   3'- -CAGGGCUGUGCUGGCCCCCGCGACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.