miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12369 3' -54.9 NC_003324.1 + 22222 0.7 0.561413
Target:  5'- gCCgCCGCGcaccuucgGGAGCGGCAaCGUCu- -3'
miRNA:   3'- -GG-GGCGCuaa-----CCUCGCUGUaGCAGcu -5'
12369 3' -54.9 NC_003324.1 + 25858 0.68 0.647576
Target:  5'- --gCGCGuggUGGAGCGAUcgCGaUCGAc -3'
miRNA:   3'- gggGCGCua-ACCUCGCUGuaGC-AGCU- -5'
12369 3' -54.9 NC_003324.1 + 28470 0.66 0.802395
Target:  5'- gCCCGCuGUUGG-GCGGUAUcCGUUGGa -3'
miRNA:   3'- gGGGCGcUAACCuCGCUGUA-GCAGCU- -5'
12369 3' -54.9 NC_003324.1 + 23140 0.67 0.71185
Target:  5'- aCCUCGUGGgacagUGGGGCGcCGauuUCGUCa- -3'
miRNA:   3'- -GGGGCGCUa----ACCUCGCuGU---AGCAGcu -5'
12369 3' -54.9 NC_003324.1 + 32590 1.1 0.001165
Target:  5'- gCCCCGCGAUUGGAGCGACAUCGUCGAc -3'
miRNA:   3'- -GGGGCGCUAACCUCGCUGUAGCAGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.