Results 61 - 65 of 65 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 12369 | 5' | -62.4 | NC_003324.1 | + | 12993 | 0.68 | 0.28267 |
|
Target: 5'- gCGCUGuucGCgGCUGGCGAucugcaGGGCGGCa -3' miRNA: 3'- -GCGGCuc-CGaCGGCCGCU------UCCGCUGc -5' |
|||||||
| 12369 | 5' | -62.4 | NC_003324.1 | + | 12518 | 0.66 | 0.356615 |
|
Target: 5'- aCGaCG-GGCUGgUGGCaguucGAGGCGACGg -3' miRNA: 3'- -GCgGCuCCGACgGCCGc----UUCCGCUGC- -5' |
|||||||
| 12369 | 5' | -62.4 | NC_003324.1 | + | 11574 | 0.66 | 0.407092 |
|
Target: 5'- aGCCGAugcugcucccgcGGCuccUGCCGGaGAcuGGuGCGACGg -3' miRNA: 3'- gCGGCU------------CCG---ACGGCCgCU--UC-CGCUGC- -5' |
|||||||
| 12369 | 5' | -62.4 | NC_003324.1 | + | 4704 | 0.67 | 0.31803 |
|
Target: 5'- aCGaCCaGGGCgGCUGGCuggaaauccaGAAGGCGGCu -3' miRNA: 3'- -GC-GGcUCCGaCGGCCG----------CUUCCGCUGc -5' |
|||||||
| 12369 | 5' | -62.4 | NC_003324.1 | + | 2518 | 0.66 | 0.389773 |
|
Target: 5'- gGUgGGGaacaaGCcGCCGGCGucGGCGGCu -3' miRNA: 3'- gCGgCUC-----CGaCGGCCGCuuCCGCUGc -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home