miRNA display CGI


Results 1 - 6 of 6 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12370 5' -52.3 NC_003324.1 + 23355 0.69 0.708955
Target:  5'- -gCGGCGGGCguca---UUGuCCCACAg -3'
miRNA:   3'- caGCCGCCCGaaacaaaAAC-GGGUGU- -5'
12370 5' -52.3 NC_003324.1 + 32762 0.72 0.518352
Target:  5'- -gUGGCGGGCUUUGUgacggGCCUuauGCu -3'
miRNA:   3'- caGCCGCCCGAAACAaaaa-CGGG---UGu -5'
12370 5' -52.3 NC_003324.1 + 32811 1.08 0.002015
Target:  5'- gGUCGGCGGGCUUUGUUUUUGCCCACAc -3'
miRNA:   3'- -CAGCCGCCCGAAACAAAAACGGGUGU- -5'
12370 5' -52.3 NC_003324.1 + 43210 0.66 0.858369
Target:  5'- cGUCGaggacggcaaccuGCGGGaCUUUGgcauuaUGCCCGCu -3'
miRNA:   3'- -CAGC-------------CGCCC-GAAACaaaa--ACGGGUGu -5'
12370 5' -52.3 NC_003324.1 + 55125 0.66 0.850583
Target:  5'- -aCGGCauGGGCUUcGUcgaagUUGCCgGCAa -3'
miRNA:   3'- caGCCG--CCCGAAaCAaa---AACGGgUGU- -5'
12370 5' -52.3 NC_003324.1 + 55911 0.66 0.823241
Target:  5'- gGUCGuGUGGGCUacUUGgaugaUGCCgACAc -3'
miRNA:   3'- -CAGC-CGCCCGA--AACaaaa-ACGGgUGU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.