miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12371 3' -52.1 NC_003324.1 + 53972 0.66 0.88073
Target:  5'- -aCGUU-CACGGuCGGCGCCGAc--- -3'
miRNA:   3'- ucGCAAuGUGCCuGUUGCGGCUacuu -5'
12371 3' -52.1 NC_003324.1 + 6582 0.66 0.88073
Target:  5'- cAGCGgccgagACgagauuGCGGuuAAUGCCGAUGAGc -3'
miRNA:   3'- -UCGCaa----UG------UGCCugUUGCGGCUACUU- -5'
12371 3' -52.1 NC_003324.1 + 40063 0.66 0.846557
Target:  5'- --aGUUGCGCGGgucuggccggaacGCGGCGCCGAa--- -3'
miRNA:   3'- ucgCAAUGUGCC-------------UGUUGCGGCUacuu -5'
12371 3' -52.1 NC_003324.1 + 52078 0.67 0.819939
Target:  5'- cGCGUgGCACGaGGCcugccguaagGACGCCGAcGAu -3'
miRNA:   3'- uCGCAaUGUGC-CUG----------UUGCGGCUaCUu -5'
12371 3' -52.1 NC_003324.1 + 35282 0.67 0.806446
Target:  5'- gAGCGUgcaggccugcucgACACGGACAuCGuuGAcGAGg -3'
miRNA:   3'- -UCGCAa------------UGUGCCUGUuGCggCUaCUU- -5'
12371 3' -52.1 NC_003324.1 + 3156 0.67 0.790563
Target:  5'- uGGCGagcuccgaaaGCACcGGCAccGCGCCGAUGAAu -3'
miRNA:   3'- -UCGCaa--------UGUGcCUGU--UGCGGCUACUU- -5'
12371 3' -52.1 NC_003324.1 + 9214 0.68 0.770087
Target:  5'- uGGCGUUACACGcGGCAugcuuCGUC-AUGAu -3'
miRNA:   3'- -UCGCAAUGUGC-CUGUu----GCGGcUACUu -5'
12371 3' -52.1 NC_003324.1 + 56320 0.7 0.668566
Target:  5'- uGGCGaaGCACGGACGGaugcaggaugucgcCGCCGAUcGAGc -3'
miRNA:   3'- -UCGCaaUGUGCCUGUU--------------GCGGCUA-CUU- -5'
12371 3' -52.1 NC_003324.1 + 10298 0.7 0.626759
Target:  5'- cGCGUuaacuUGCGCcGGCAugauauugGCGCCGAUGAGc -3'
miRNA:   3'- uCGCA-----AUGUGcCUGU--------UGCGGCUACUU- -5'
12371 3' -52.1 NC_003324.1 + 5549 0.73 0.473071
Target:  5'- gAGCGUgGgGCGGGCGACGCCGc---- -3'
miRNA:   3'- -UCGCAaUgUGCCUGUUGCGGCuacuu -5'
12371 3' -52.1 NC_003324.1 + 8386 0.73 0.462745
Target:  5'- cGGCGUUACccuGCGGAUGACGCUGGc--- -3'
miRNA:   3'- -UCGCAAUG---UGCCUGUUGCGGCUacuu -5'
12371 3' -52.1 NC_003324.1 + 35039 0.78 0.263778
Target:  5'- -----gACACGGGCGAUGCCGAUGAu -3'
miRNA:   3'- ucgcaaUGUGCCUGUUGCGGCUACUu -5'
12371 3' -52.1 NC_003324.1 + 33515 1.07 0.00285
Target:  5'- gAGCGUUACACGGACAACGCCGAUGAAg -3'
miRNA:   3'- -UCGCAAUGUGCCUGUUGCGGCUACUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.