miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12373 5' -50.6 NC_003324.1 + 31546 0.66 0.934587
Target:  5'- uGGCCGccacGCGcGcCCGCGGucUCGAUAUGc -3'
miRNA:   3'- -CCGGCa---CGUuC-GGCGUU--AGCUAUAUc -5'
12373 5' -50.6 NC_003324.1 + 50387 0.66 0.928929
Target:  5'- cGCCGuUGUcccGGGCCGCGAcauguUCGGUGa-- -3'
miRNA:   3'- cCGGC-ACG---UUCGGCGUU-----AGCUAUauc -5'
12373 5' -50.6 NC_003324.1 + 16319 0.66 0.922975
Target:  5'- gGGCCcUGCGcuGGCCGC-GUCGGc---- -3'
miRNA:   3'- -CCGGcACGU--UCGGCGuUAGCUauauc -5'
12373 5' -50.6 NC_003324.1 + 35458 0.66 0.910186
Target:  5'- cGGCCGaGCAGGCUGCAGc-------- -3'
miRNA:   3'- -CCGGCaCGUUCGGCGUUagcuauauc -5'
12373 5' -50.6 NC_003324.1 + 4449 0.67 0.896233
Target:  5'- gGGCCGgGCAuGCUGCAAaccCGAUucAGg -3'
miRNA:   3'- -CCGGCaCGUuCGGCGUUa--GCUAuaUC- -5'
12373 5' -50.6 NC_003324.1 + 8915 0.67 0.896233
Target:  5'- cGGCCGUGUugauagauGCUGCGagcGUCGAg---- -3'
miRNA:   3'- -CCGGCACGuu------CGGCGU---UAGCUauauc -5'
12373 5' -50.6 NC_003324.1 + 39460 0.67 0.881145
Target:  5'- aGCCGcagGCAAGCUGCuucgccgGAUGUGGc -3'
miRNA:   3'- cCGGCa--CGUUCGGCGuuag---CUAUAUC- -5'
12373 5' -50.6 NC_003324.1 + 31956 0.68 0.856485
Target:  5'- aGGCCGguuUGCAguuccGGCUucauGCucUCGAUGUAGg -3'
miRNA:   3'- -CCGGC---ACGU-----UCGG----CGuuAGCUAUAUC- -5'
12373 5' -50.6 NC_003324.1 + 5252 0.68 0.83878
Target:  5'- uGGCCGccGCAccAGCgGCAggCGAUAUc- -3'
miRNA:   3'- -CCGGCa-CGU--UCGgCGUuaGCUAUAuc -5'
12373 5' -50.6 NC_003324.1 + 48491 0.68 0.829576
Target:  5'- aGGCgGUGaagcguuccaAGGCCGCAGcCGAgcagGUAGg -3'
miRNA:   3'- -CCGgCACg---------UUCGGCGUUaGCUa---UAUC- -5'
12373 5' -50.6 NC_003324.1 + 14646 0.69 0.823946
Target:  5'- cGCCG-GCAGGCCGCGacccauguugaccacGUCGGc---- -3'
miRNA:   3'- cCGGCaCGUUCGGCGU---------------UAGCUauauc -5'
12373 5' -50.6 NC_003324.1 + 12187 0.7 0.748917
Target:  5'- aGGCCGcGCGcuCCGCGAUCaGGUAcAGa -3'
miRNA:   3'- -CCGGCaCGUucGGCGUUAG-CUAUaUC- -5'
12373 5' -50.6 NC_003324.1 + 51975 0.7 0.738136
Target:  5'- aGGCCc-GCAAGCCGCAuUCcugcAUAUGGu -3'
miRNA:   3'- -CCGGcaCGUUCGGCGUuAGc---UAUAUC- -5'
12373 5' -50.6 NC_003324.1 + 20387 0.72 0.656779
Target:  5'- cGGCCGUGCcguauucgacaacgGAGCCGuCAucGUCGAUc--- -3'
miRNA:   3'- -CCGGCACG--------------UUCGGC-GU--UAGCUAuauc -5'
12373 5' -50.6 NC_003324.1 + 30075 0.73 0.603407
Target:  5'- cGCCagaGUGCAccGGCCGgGAUCGAUGcGGa -3'
miRNA:   3'- cCGG---CACGU--UCGGCgUUAGCUAUaUC- -5'
12373 5' -50.6 NC_003324.1 + 33898 1.11 0.002166
Target:  5'- cGGCCGUGCAAGCCGCAAUCGAUAUAGc -3'
miRNA:   3'- -CCGGCACGUUCGGCGUUAGCUAUAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.