miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12374 5' -55.8 NC_003324.1 + 13926 0.67 0.652215
Target:  5'- -aAUGC-UGCgGAgcgaGUGCCGUUGGCUc -3'
miRNA:   3'- gcUGCGaACGgUUa---CACGGCAGCCGG- -5'
12374 5' -55.8 NC_003324.1 + 31225 0.67 0.652215
Target:  5'- aCGAUGCccccGCCAGcgccaGcGCCGcCGGCCg -3'
miRNA:   3'- -GCUGCGaa--CGGUUa----CaCGGCaGCCGG- -5'
12374 5' -55.8 NC_003324.1 + 49469 0.67 0.656564
Target:  5'- cCGACGaggacuaUGCCAagGUGCCGguccgcaacgagggCGGCa -3'
miRNA:   3'- -GCUGCga-----ACGGUuaCACGGCa-------------GCCGg -5'
12374 5' -55.8 NC_003324.1 + 18426 0.67 0.673917
Target:  5'- gCGACGCUggucauggucUGCgCGAccuUGCCGcCGGUCg -3'
miRNA:   3'- -GCUGCGA----------ACG-GUUac-ACGGCaGCCGG- -5'
12374 5' -55.8 NC_003324.1 + 57047 0.67 0.673917
Target:  5'- aCGACGCUcGCaa----GCCGUCuuGGCCu -3'
miRNA:   3'- -GCUGCGAaCGguuacaCGGCAG--CCGG- -5'
12374 5' -55.8 NC_003324.1 + 39252 0.67 0.66308
Target:  5'- cCGugGCUgcGCCAGaagGUGCCGaUCGucaCCg -3'
miRNA:   3'- -GCugCGAa-CGGUUa--CACGGC-AGCc--GG- -5'
12374 5' -55.8 NC_003324.1 + 54230 0.66 0.695464
Target:  5'- uGACGCg-GCCAGcuc-CCGUCGaGCCa -3'
miRNA:   3'- gCUGCGaaCGGUUacacGGCAGC-CGG- -5'
12374 5' -55.8 NC_003324.1 + 14544 0.66 0.716771
Target:  5'- uGGCGCUcaagGCCGAcguggucaacaUGgGUCG-CGGCCu -3'
miRNA:   3'- gCUGCGAa---CGGUU-----------ACaCGGCaGCCGG- -5'
12374 5' -55.8 NC_003324.1 + 27882 0.66 0.716771
Target:  5'- uGGCGUagccgGCCAuuaccuUGUGCuCGUcgaagCGGCCa -3'
miRNA:   3'- gCUGCGaa---CGGUu-----ACACG-GCA-----GCCGG- -5'
12374 5' -55.8 NC_003324.1 + 38360 0.66 0.716771
Target:  5'- gCGGCGCUggucGCCGucGUGCgGgaggaaguggUGGCCg -3'
miRNA:   3'- -GCUGCGAa---CGGUuaCACGgCa---------GCCGG- -5'
12374 5' -55.8 NC_003324.1 + 57283 0.66 0.727307
Target:  5'- aGAUGCUcaacGCCGGUcGUGCCGcCcucGCCu -3'
miRNA:   3'- gCUGCGAa---CGGUUA-CACGGCaGc--CGG- -5'
12374 5' -55.8 NC_003324.1 + 18234 0.66 0.727307
Target:  5'- aCGAC-CUUGCCGGUGUcGgCGaaacCGGCg -3'
miRNA:   3'- -GCUGcGAACGGUUACA-CgGCa---GCCGg -5'
12374 5' -55.8 NC_003324.1 + 50087 0.66 0.727307
Target:  5'- -aGCGCUUGCCGAUcuUGUgGgCGGCg -3'
miRNA:   3'- gcUGCGAACGGUUAc-ACGgCaGCCGg -5'
12374 5' -55.8 NC_003324.1 + 22494 0.66 0.716771
Target:  5'- uGACGCUUGgCGAagGUGU--UCGGCg -3'
miRNA:   3'- gCUGCGAACgGUUa-CACGgcAGCCGg -5'
12374 5' -55.8 NC_003324.1 + 5338 0.66 0.695464
Target:  5'- gGAuauCGCcUGCCGcugGUGCgG-CGGCCa -3'
miRNA:   3'- gCU---GCGaACGGUua-CACGgCaGCCGG- -5'
12374 5' -55.8 NC_003324.1 + 47661 0.66 0.727307
Target:  5'- uGugGCacGCCGGUGcGCuggacaguucCGUCGGCg -3'
miRNA:   3'- gCugCGaaCGGUUACaCG----------GCAGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.