miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12374 5' -55.8 NC_003324.1 + 54341 0.68 0.597813
Target:  5'- uCGGCGCUgaUGCCGGUccauggcaaccgGUGCCG-C-GCCu -3'
miRNA:   3'- -GCUGCGA--ACGGUUA------------CACGGCaGcCGG- -5'
12374 5' -55.8 NC_003324.1 + 6385 0.68 0.597813
Target:  5'- --gUGCUcGCCAA---GCCGUCGGCUu -3'
miRNA:   3'- gcuGCGAaCGGUUacaCGGCAGCCGG- -5'
12374 5' -55.8 NC_003324.1 + 15623 0.68 0.597813
Target:  5'- uCGGCGCUUuCC-AUGUcGCCGUUGGa- -3'
miRNA:   3'- -GCUGCGAAcGGuUACA-CGGCAGCCgg -5'
12374 5' -55.8 NC_003324.1 + 16225 0.68 0.586982
Target:  5'- aCGGgGCagGCC---GUGCCGacgCGGCCa -3'
miRNA:   3'- -GCUgCGaaCGGuuaCACGGCa--GCCGG- -5'
12374 5' -55.8 NC_003324.1 + 47877 0.68 0.56544
Target:  5'- cCGGCGUcaggaccuUUGCCGaaccGUGUgcGCCGaUGGCCg -3'
miRNA:   3'- -GCUGCG--------AACGGU----UACA--CGGCaGCCGG- -5'
12374 5' -55.8 NC_003324.1 + 47566 0.68 0.56544
Target:  5'- uGACGaggGCCGAUcgacccucGCCGUCGaGCCg -3'
miRNA:   3'- gCUGCgaaCGGUUAca------CGGCAGC-CGG- -5'
12374 5' -55.8 NC_003324.1 + 8088 0.68 0.554745
Target:  5'- uGACcaugGC-UGCCAcgGUcGCCGUUGcGCCu -3'
miRNA:   3'- gCUG----CGaACGGUuaCA-CGGCAGC-CGG- -5'
12374 5' -55.8 NC_003324.1 + 53737 0.69 0.502306
Target:  5'- uCGGCGCU--CCAagGUGCCGcaCGGCg -3'
miRNA:   3'- -GCUGCGAacGGUuaCACGGCa-GCCGg -5'
12374 5' -55.8 NC_003324.1 + 27684 0.7 0.481933
Target:  5'- uGGCGCcgagcuucuccUUGgCGAUGUGCgCcUCGGCCu -3'
miRNA:   3'- gCUGCG-----------AACgGUUACACG-GcAGCCGG- -5'
12374 5' -55.8 NC_003324.1 + 46405 0.7 0.442448
Target:  5'- aGGCGCUUGCgguaguccugCAGUGU-UCGcCGGCCg -3'
miRNA:   3'- gCUGCGAACG----------GUUACAcGGCaGCCGG- -5'
12374 5' -55.8 NC_003324.1 + 6314 0.71 0.404855
Target:  5'- uGGCGCUUGCUgcgcUGcUGCUGcgccUCGGCCu -3'
miRNA:   3'- gCUGCGAACGGuu--AC-ACGGC----AGCCGG- -5'
12374 5' -55.8 NC_003324.1 + 38978 0.72 0.378017
Target:  5'- uGGCGCUUGCCGAg--GCUGguaagaGGCUg -3'
miRNA:   3'- gCUGCGAACGGUUacaCGGCag----CCGG- -5'
12374 5' -55.8 NC_003324.1 + 29065 0.72 0.378017
Target:  5'- uCGACGC-UGCCGGUGaagaUGCauUCGGUCa -3'
miRNA:   3'- -GCUGCGaACGGUUAC----ACGgcAGCCGG- -5'
12374 5' -55.8 NC_003324.1 + 35350 0.73 0.304946
Target:  5'- -uGCGgUUGCUGuUGUGCCugGUCGGCCu -3'
miRNA:   3'- gcUGCgAACGGUuACACGG--CAGCCGG- -5'
12374 5' -55.8 NC_003324.1 + 8330 0.78 0.163673
Target:  5'- uCGGCGCUcGUUAcgGUGaCCGUCGGCg -3'
miRNA:   3'- -GCUGCGAaCGGUuaCAC-GGCAGCCGg -5'
12374 5' -55.8 NC_003324.1 + 34520 1.13 0.000539
Target:  5'- cCGACGCUUGCCAAUGUGCCGUCGGCCg -3'
miRNA:   3'- -GCUGCGAACGGUUACACGGCAGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.