miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12375 3' -51.7 NC_003324.1 + 23098 0.66 0.862288
Target:  5'- cGGGCgccaAGGUCCUggcGACGAcugaGAAGGAu -3'
miRNA:   3'- -CUCG----UCCGGGAa--CUGCUaaa-CUUCCU- -5'
12375 3' -51.7 NC_003324.1 + 28608 0.66 0.853713
Target:  5'- cGGCAGGCCUcagUGGucuCGGUccGAAGGGc -3'
miRNA:   3'- cUCGUCCGGGa--ACU---GCUAaaCUUCCU- -5'
12375 3' -51.7 NC_003324.1 + 55577 0.66 0.853713
Target:  5'- cGGCAGGCuCCUgcccGGCGuggaagaaaUGGAGGAu -3'
miRNA:   3'- cUCGUCCG-GGAa---CUGCuaa------ACUUCCU- -5'
12375 3' -51.7 NC_003324.1 + 57245 0.68 0.790345
Target:  5'- cGGCAGGCCCUUGGCuucgcacucagucGggGGc -3'
miRNA:   3'- cUCGUCCGGGAACUGcuaaa--------CuuCCu -5'
12375 3' -51.7 NC_003324.1 + 16438 0.68 0.777026
Target:  5'- cGAGCAGGUCCUgGACGAcgcGAucGAc -3'
miRNA:   3'- -CUCGUCCGGGAaCUGCUaaaCUucCU- -5'
12375 3' -51.7 NC_003324.1 + 48938 0.68 0.777026
Target:  5'- uGAGCGcaauGCCCUcugagcUGGCGA--UGAAGGAc -3'
miRNA:   3'- -CUCGUc---CGGGA------ACUGCUaaACUUCCU- -5'
12375 3' -51.7 NC_003324.1 + 34854 1.1 0.001935
Target:  5'- cGAGCAGGCCCUUGACGAUUUGAAGGAu -3'
miRNA:   3'- -CUCGUCCGGGAACUGCUAAACUUCCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.