miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12380 5' -60.1 NC_003324.1 + 15137 0.67 0.453158
Target:  5'- aCACGGCGCC-ACGUgaaaagGCUcgccgccgaucuccaUCGCCGGu -3'
miRNA:   3'- cGUGCCGCGGcUGCG------CGA---------------AGCGGUCu -5'
12380 5' -60.1 NC_003324.1 + 24674 0.67 0.449368
Target:  5'- uGUACGGCcCCGAugauccUGCGCUggUCGCCc-- -3'
miRNA:   3'- -CGUGCCGcGGCU------GCGCGA--AGCGGucu -5'
12380 5' -60.1 NC_003324.1 + 24056 0.67 0.443715
Target:  5'- gGCACuGGCgggcuuuaccuucucGCCGGUGCGCUgCGCCAc- -3'
miRNA:   3'- -CGUG-CCG---------------CGGCUGCGCGAaGCGGUcu -5'
12380 5' -60.1 NC_003324.1 + 19189 0.67 0.430683
Target:  5'- uGCGCGGCGCUGG-GCGaucuccaUCGCCu-- -3'
miRNA:   3'- -CGUGCCGCGGCUgCGCga-----AGCGGucu -5'
12380 5' -60.1 NC_003324.1 + 17561 0.67 0.421513
Target:  5'- gGUcCGGCauGCCGAUGCGCgaCGaCAGAu -3'
miRNA:   3'- -CGuGCCG--CGGCUGCGCGaaGCgGUCU- -5'
12380 5' -60.1 NC_003324.1 + 51769 0.67 0.421513
Target:  5'- uGCA-GGCGCuCGACGCGaa-CGUCGGu -3'
miRNA:   3'- -CGUgCCGCG-GCUGCGCgaaGCGGUCu -5'
12380 5' -60.1 NC_003324.1 + 42101 0.67 0.421513
Target:  5'- aGCAgGG-GCCGGgaGCGCUUCGCa--- -3'
miRNA:   3'- -CGUgCCgCGGCUg-CGCGAAGCGgucu -5'
12380 5' -60.1 NC_003324.1 + 3555 0.67 0.412462
Target:  5'- -aACGGCGCUucgGugGCGCc-CGCCAu- -3'
miRNA:   3'- cgUGCCGCGG---CugCGCGaaGCGGUcu -5'
12380 5' -60.1 NC_003324.1 + 17168 0.67 0.412462
Target:  5'- aGCGauugacgaGGCGCUGGCGCGUc-UGUCGGAc -3'
miRNA:   3'- -CGUg-------CCGCGGCUGCGCGaaGCGGUCU- -5'
12380 5' -60.1 NC_003324.1 + 46742 0.67 0.412462
Target:  5'- aGCACggGGCGCCGAgGUGUgccccgCGCUAu- -3'
miRNA:   3'- -CGUG--CCGCGGCUgCGCGaa----GCGGUcu -5'
12380 5' -60.1 NC_003324.1 + 54052 0.67 0.411564
Target:  5'- cGCGuCGGCGCCGAccgugaaCGUGCUcgaaaUUGUCGGc -3'
miRNA:   3'- -CGU-GCCGCGGCU-------GCGCGA-----AGCGGUCu -5'
12380 5' -60.1 NC_003324.1 + 14664 0.67 0.403532
Target:  5'- -uGCGcCGCCGGC-CGCUUgCGCCGGc -3'
miRNA:   3'- cgUGCcGCGGCUGcGCGAA-GCGGUCu -5'
12380 5' -60.1 NC_003324.1 + 20671 0.67 0.403532
Target:  5'- gGCgACGGCGCCacagcaccgGAUccCGC-UCGCCAGAa -3'
miRNA:   3'- -CG-UGCCGCGG---------CUGc-GCGaAGCGGUCU- -5'
12380 5' -60.1 NC_003324.1 + 8282 0.67 0.403532
Target:  5'- uGguCGaaGUGCCaGGCGCGCgcCGCCGGGc -3'
miRNA:   3'- -CguGC--CGCGG-CUGCGCGaaGCGGUCU- -5'
12380 5' -60.1 NC_003324.1 + 54320 0.67 0.403532
Target:  5'- gGCAacCGGUGCCG-CGC-CUUCGCUuuGAg -3'
miRNA:   3'- -CGU--GCCGCGGCuGCGcGAAGCGGu-CU- -5'
12380 5' -60.1 NC_003324.1 + 43790 0.68 0.398233
Target:  5'- aGCAgGGUGCCGggaacgccggcaagGCGCGUgaaaucacggauggcCGCCGGAu -3'
miRNA:   3'- -CGUgCCGCGGC--------------UGCGCGaa-------------GCGGUCU- -5'
12380 5' -60.1 NC_003324.1 + 44319 0.68 0.392108
Target:  5'- gGCGCGGCcgauagccucugcaGCCacGGCGCGCgcugCGCCcuuGAa -3'
miRNA:   3'- -CGUGCCG--------------CGG--CUGCGCGaa--GCGGu--CU- -5'
12380 5' -60.1 NC_003324.1 + 21153 0.68 0.386044
Target:  5'- cCGCGGCgGCCGACaagGCaGCgUUUGCCGGu -3'
miRNA:   3'- cGUGCCG-CGGCUG---CG-CG-AAGCGGUCu -5'
12380 5' -60.1 NC_003324.1 + 31310 0.68 0.386044
Target:  5'- -gGCGGCGCUGGCGCuggcggggGCaUCGUCAu- -3'
miRNA:   3'- cgUGCCGCGGCUGCG--------CGaAGCGGUcu -5'
12380 5' -60.1 NC_003324.1 + 5428 0.68 0.374948
Target:  5'- -uGCGGCGCCGAguucuucuccgcauCGaCGCUggGUCAGGc -3'
miRNA:   3'- cgUGCCGCGGCU--------------GC-GCGAagCGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.