miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12381 3' -55 NC_003324.1 + 38351 0.65 0.775095
Target:  5'- gGCACCGGGgcgGCGc---UGGUCGCCGu -3'
miRNA:   3'- -CGUGGCCUa--UGCacaaGCCGGUGGUg -5'
12381 3' -55 NC_003324.1 + 30065 0.66 0.754832
Target:  5'- cCGCCGGucGCGacacCGGCCGCUGCg -3'
miRNA:   3'- cGUGGCCuaUGCacaaGCCGGUGGUG- -5'
12381 3' -55 NC_003324.1 + 41354 0.66 0.754832
Target:  5'- gGCGCUGGggGCGgcuuaaugaaGUagccggcaUCGGuCCGCCACu -3'
miRNA:   3'- -CGUGGCCuaUGCa---------CA--------AGCC-GGUGGUG- -5'
12381 3' -55 NC_003324.1 + 44306 0.66 0.753805
Target:  5'- -aACCGGGcGCgGUGgcgCGGCCgauagccucugcaGCCACg -3'
miRNA:   3'- cgUGGCCUaUG-CACaa-GCCGG-------------UGGUG- -5'
12381 3' -55 NC_003324.1 + 23759 0.66 0.74139
Target:  5'- uGCGCCGGAaaucgggguccgauUcggcgGCGcGUUCGGCCuCgGCg -3'
miRNA:   3'- -CGUGGCCU--------------A-----UGCaCAAGCCGGuGgUG- -5'
12381 3' -55 NC_003324.1 + 19053 0.66 0.734074
Target:  5'- cCGCuCGGu--CGU-UUCGGCCGCUACu -3'
miRNA:   3'- cGUG-GCCuauGCAcAAGCCGGUGGUG- -5'
12381 3' -55 NC_003324.1 + 35362 0.67 0.717171
Target:  5'- uGUGCCuGGucgGCcUGUgcugcugcagccugcUCGGCCGCCGCg -3'
miRNA:   3'- -CGUGG-CCua-UGcACA---------------AGCCGGUGGUG- -5'
12381 3' -55 NC_003324.1 + 42493 0.67 0.702204
Target:  5'- uGC-CCGGGUGCGcuucCGGUCcCCACg -3'
miRNA:   3'- -CGuGGCCUAUGCacaaGCCGGuGGUG- -5'
12381 3' -55 NC_003324.1 + 40164 0.67 0.691431
Target:  5'- aGCAcCCGGAUuucgGCGccgcGUUcCGGCCAgacCCGCg -3'
miRNA:   3'- -CGU-GGCCUA----UGCa---CAA-GCCGGU---GGUG- -5'
12381 3' -55 NC_003324.1 + 23996 0.67 0.680601
Target:  5'- cGCGCUGGuaggGCGgcgGUagGGCUGCUGCg -3'
miRNA:   3'- -CGUGGCCua--UGCa--CAagCCGGUGGUG- -5'
12381 3' -55 NC_003324.1 + 14704 0.67 0.680601
Target:  5'- -uGCCGGAaagggcCGUagcucCGGCCGCCACg -3'
miRNA:   3'- cgUGGCCUau----GCAcaa--GCCGGUGGUG- -5'
12381 3' -55 NC_003324.1 + 36814 0.67 0.680601
Target:  5'- cGCAUCGGAUGa-UGUcacUGGCUACCAg -3'
miRNA:   3'- -CGUGGCCUAUgcACAa--GCCGGUGGUg -5'
12381 3' -55 NC_003324.1 + 1531 0.67 0.669725
Target:  5'- cGCGCCGGAUACG---UCGcGCCGuuuccuuugcgUCGCg -3'
miRNA:   3'- -CGUGGCCUAUGCacaAGC-CGGU-----------GGUG- -5'
12381 3' -55 NC_003324.1 + 39716 0.68 0.658814
Target:  5'- uGC-CCGGccUGCG-GUUCugcaGCCACCACa -3'
miRNA:   3'- -CGuGGCCu-AUGCaCAAGc---CGGUGGUG- -5'
12381 3' -55 NC_003324.1 + 55029 0.68 0.647879
Target:  5'- cGCGCCGGGcaggcaagGCGgacgGcUgGGCUGCCGCg -3'
miRNA:   3'- -CGUGGCCUa-------UGCa---CaAgCCGGUGGUG- -5'
12381 3' -55 NC_003324.1 + 4477 0.69 0.574717
Target:  5'- gGCGCCGGAUGCGgcucacauccucuaCGGCgGCgACg -3'
miRNA:   3'- -CGUGGCCUAUGCacaa----------GCCGgUGgUG- -5'
12381 3' -55 NC_003324.1 + 30133 0.69 0.571471
Target:  5'- cGCgACCGGcgGCGUGaUgGGCgGCgGCa -3'
miRNA:   3'- -CG-UGGCCuaUGCACaAgCCGgUGgUG- -5'
12381 3' -55 NC_003324.1 + 42197 0.69 0.571471
Target:  5'- uGCGCCGGA---GUGaUCGGCCcaacgcuuaacACCAUa -3'
miRNA:   3'- -CGUGGCCUaugCACaAGCCGG-----------UGGUG- -5'
12381 3' -55 NC_003324.1 + 21489 0.7 0.507744
Target:  5'- -uGCCGGAUgccgcgcccgucGCGUugcucaaggucGgaCGGCCGCCACg -3'
miRNA:   3'- cgUGGCCUA------------UGCA-----------CaaGCCGGUGGUG- -5'
12381 3' -55 NC_003324.1 + 30067 0.71 0.477008
Target:  5'- uGCACCGGccgggaucgAUGCGgaccCGGCUGCCGCc -3'
miRNA:   3'- -CGUGGCC---------UAUGCacaaGCCGGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.