miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12381 5' -63.6 NC_003324.1 + 54339 0.66 0.370382
Target:  5'- gGCGCuGAugccgguccaUGGCaACCGGUGCCGCgCCu -3'
miRNA:   3'- -CGUG-CU----------GCCGcUGGUCGCGGCGgGGc -5'
12381 5' -63.6 NC_003324.1 + 32119 0.66 0.370382
Target:  5'- gGC-CGAgugccuUGGUcuccgccucgGGCCGG-GCCGCCCCGg -3'
miRNA:   3'- -CGuGCU------GCCG----------CUGGUCgCGGCGGGGC- -5'
12381 5' -63.6 NC_003324.1 + 55040 0.66 0.370382
Target:  5'- gGCAaGGCGGaCGGCUGG-GCUGCCgCGa -3'
miRNA:   3'- -CGUgCUGCC-GCUGGUCgCGGCGGgGC- -5'
12381 5' -63.6 NC_003324.1 + 13015 0.66 0.370382
Target:  5'- uGCAgGGCGGC-AUCAaCGCCcGCCCUc -3'
miRNA:   3'- -CGUgCUGCCGcUGGUcGCGG-CGGGGc -5'
12381 5' -63.6 NC_003324.1 + 5466 0.66 0.370382
Target:  5'- gGCA-GGCGGCG-UC-GC-CCGCCCCa -3'
miRNA:   3'- -CGUgCUGCCGCuGGuCGcGGCGGGGc -5'
12381 5' -63.6 NC_003324.1 + 49898 0.66 0.370382
Target:  5'- cGCuGCGuCGGCGcgcucgugcucGCCuuCGCUGCCCCc -3'
miRNA:   3'- -CG-UGCuGCCGC-----------UGGucGCGGCGGGGc -5'
12381 5' -63.6 NC_003324.1 + 30151 0.66 0.370382
Target:  5'- aGC-CG-CaGCGGCCGGUGUCGCgaCCGg -3'
miRNA:   3'- -CGuGCuGcCGCUGGUCGCGGCGg-GGC- -5'
12381 5' -63.6 NC_003324.1 + 326 0.66 0.362297
Target:  5'- -aACGAacCGGCGAUgCGGcCGCCaGCCCUa -3'
miRNA:   3'- cgUGCU--GCCGCUG-GUC-GCGG-CGGGGc -5'
12381 5' -63.6 NC_003324.1 + 2545 0.66 0.362297
Target:  5'- -gGCGACGGaCGGCagaCGGCacGCCGUUCCa -3'
miRNA:   3'- cgUGCUGCC-GCUG---GUCG--CGGCGGGGc -5'
12381 5' -63.6 NC_003324.1 + 3927 0.66 0.354335
Target:  5'- cGCAUGACGuGCGGCuCAaCGaaggaGCCCCa -3'
miRNA:   3'- -CGUGCUGC-CGCUG-GUcGCgg---CGGGGc -5'
12381 5' -63.6 NC_003324.1 + 19273 0.66 0.354335
Target:  5'- -gGCGAUGGagauCGcCCAGCGCCGCgCa- -3'
miRNA:   3'- cgUGCUGCC----GCuGGUCGCGGCGgGgc -5'
12381 5' -63.6 NC_003324.1 + 26925 0.66 0.354335
Target:  5'- gGCAUGGCGGCGAucgacgaggcacUCAGCggaGCgGCgCCa -3'
miRNA:   3'- -CGUGCUGCCGCU------------GGUCG---CGgCGgGGc -5'
12381 5' -63.6 NC_003324.1 + 50691 0.66 0.354335
Target:  5'- --uCGACGGUGACCc---CCGCCUCGg -3'
miRNA:   3'- cguGCUGCCGCUGGucgcGGCGGGGC- -5'
12381 5' -63.6 NC_003324.1 + 18906 0.66 0.346497
Target:  5'- gGCGUGAUGGaGACUGGCGCCGaCCUu -3'
miRNA:   3'- -CGUGCUGCCgCUGGUCGCGGCgGGGc -5'
12381 5' -63.6 NC_003324.1 + 53542 0.66 0.346497
Target:  5'- ---gGACGGCGAUCA-CGuCCGCUUCGa -3'
miRNA:   3'- cgugCUGCCGCUGGUcGC-GGCGGGGC- -5'
12381 5' -63.6 NC_003324.1 + 53483 0.66 0.346497
Target:  5'- cGCGCGGaagccgaGGCcgaauGCCGGCGauGCCCUGa -3'
miRNA:   3'- -CGUGCUg------CCGc----UGGUCGCggCGGGGC- -5'
12381 5' -63.6 NC_003324.1 + 49049 0.66 0.338784
Target:  5'- cCGCGGCGGCGGggcaauccauCCGGCuCUGCaCCGg -3'
miRNA:   3'- cGUGCUGCCGCU----------GGUCGcGGCGgGGC- -5'
12381 5' -63.6 NC_003324.1 + 18043 0.66 0.338784
Target:  5'- -uGCGAUaGGCGGCgAGUGCCGUCaCUu -3'
miRNA:   3'- cgUGCUG-CCGCUGgUCGCGGCGG-GGc -5'
12381 5' -63.6 NC_003324.1 + 34060 0.66 0.338784
Target:  5'- aUACccACGGCGcccaauGCCAGCGgcuCCGCCCUGu -3'
miRNA:   3'- cGUGc-UGCCGC------UGGUCGC---GGCGGGGC- -5'
12381 5' -63.6 NC_003324.1 + 5096 0.66 0.338784
Target:  5'- gGCGCGAuCGaCGAUCuGCGCCGCUUUu -3'
miRNA:   3'- -CGUGCU-GCcGCUGGuCGCGGCGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.