miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12382 5' -62.1 NC_003324.1 + 42767 0.66 0.386044
Target:  5'- aUGCC---UCGCCaGcGGUUGCCGGUCc -3'
miRNA:   3'- -ACGGgauAGCGGgCcUCGACGGCCAG- -5'
12382 5' -62.1 NC_003324.1 + 52281 0.66 0.386044
Target:  5'- aGCCCcuucUAcCGCCCgauucGGGGCgGCCGG-Cg -3'
miRNA:   3'- aCGGG----AUaGCGGG-----CCUCGaCGGCCaG- -5'
12382 5' -62.1 NC_003324.1 + 35302 0.66 0.377489
Target:  5'- aGUCCgAUCGCgCCGGcggauugcgccGGCUGCugCGGUUg -3'
miRNA:   3'- aCGGGaUAGCG-GGCC-----------UCGACG--GCCAG- -5'
12382 5' -62.1 NC_003324.1 + 31137 0.66 0.374948
Target:  5'- uUGCgCCUggCGCUgcaggccugccucgCGGAGCUGcCCGGcCu -3'
miRNA:   3'- -ACG-GGAuaGCGG--------------GCCUCGAC-GGCCaG- -5'
12382 5' -62.1 NC_003324.1 + 4281 0.66 0.369063
Target:  5'- uUGCCCUcgaGUCGCUCGucGCcGuaGGUCg -3'
miRNA:   3'- -ACGGGA---UAGCGGGCcuCGaCggCCAG- -5'
12382 5' -62.1 NC_003324.1 + 42847 0.66 0.352601
Target:  5'- cGCCgUAUUGCUgguauuCGaGGCUGCCGGcCg -3'
miRNA:   3'- aCGGgAUAGCGG------GCcUCGACGGCCaG- -5'
12382 5' -62.1 NC_003324.1 + 32345 0.66 0.336666
Target:  5'- cUGCCUagcggcAUCGCCCGGcuuccuGUaGCCGGUg -3'
miRNA:   3'- -ACGGGa-----UAGCGGGCCu-----CGaCGGCCAg -5'
12382 5' -62.1 NC_003324.1 + 31010 0.67 0.321263
Target:  5'- cGCUCUcgucgAUCGCuuGGuAGCgaccgGCgCGGUCg -3'
miRNA:   3'- aCGGGA-----UAGCGggCC-UCGa----CG-GCCAG- -5'
12382 5' -62.1 NC_003324.1 + 39673 0.68 0.27757
Target:  5'- cGCCCUGUCGaggacgaUCCGGAG--GCUGGUg -3'
miRNA:   3'- aCGGGAUAGC-------GGGCCUCgaCGGCCAg -5'
12382 5' -62.1 NC_003324.1 + 43700 0.68 0.258519
Target:  5'- cGCCgaaUGUCGUCCGGuaccgccuGCUGCCaaucgggaucagGGUCg -3'
miRNA:   3'- aCGGg--AUAGCGGGCCu-------CGACGG------------CCAG- -5'
12382 5' -62.1 NC_003324.1 + 29556 0.69 0.228195
Target:  5'- cGCCCgacgCGCCCGcAGCcaggcgGCCGuGUCa -3'
miRNA:   3'- aCGGGaua-GCGGGCcUCGa-----CGGC-CAG- -5'
12382 5' -62.1 NC_003324.1 + 28619 0.71 0.154835
Target:  5'- cGCCCUcGUgGCCCGGAucGUUGCgGGcCg -3'
miRNA:   3'- aCGGGA-UAgCGGGCCU--CGACGgCCaG- -5'
12382 5' -62.1 NC_003324.1 + 28090 0.71 0.154835
Target:  5'- gUGCCUUugCGCUCGGAGCcaGCCGGg- -3'
miRNA:   3'- -ACGGGAuaGCGGGCCUCGa-CGGCCag -5'
12382 5' -62.1 NC_003324.1 + 53047 0.72 0.142994
Target:  5'- aGCCCUugGUCGCCCGGuucCUuCCGGUg -3'
miRNA:   3'- aCGGGA--UAGCGGGCCuc-GAcGGCCAg -5'
12382 5' -62.1 NC_003324.1 + 38634 1.09 0.0002
Target:  5'- gUGCCCUAUCGCCCGGAGCUGCCGGUCa -3'
miRNA:   3'- -ACGGGAUAGCGGGCCUCGACGGCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.