Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
12383 | 3' | -56 | NC_003324.1 | + | 25240 | 0.66 | 0.641853 |
Target: 5'- -gAGCACCUggCCGCCCUuaaagccaaggCGAcGGGCg -3' miRNA: 3'- ugUUGUGGAa-GGCGGGAca---------GCU-CCUG- -5' |
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12383 | 3' | -56 | NC_003324.1 | + | 7311 | 0.66 | 0.644046 |
Target: 5'- cCAACACCgugaccgucgUUCCGCgCgc-CGAGGGCa -3' miRNA: 3'- uGUUGUGG----------AAGGCGgGacaGCUCCUG- -5' |
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12383 | 3' | -56 | NC_003324.1 | + | 49967 | 0.66 | 0.687706 |
Target: 5'- aGCAugGCgaucggcgCUGCCCUGaUGGGGGCa -3' miRNA: 3'- -UGUugUGgaa-----GGCGGGACaGCUCCUG- -5' |
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12383 | 3' | -56 | NC_003324.1 | + | 34065 | 0.67 | 0.595839 |
Target: 5'- cACGGCGCCcaaugccagcggcUCCGCCCUGUCcauGaGACc -3' miRNA: 3'- -UGUUGUGGa------------AGGCGGGACAGcu-C-CUG- -5' |
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12383 | 3' | -56 | NC_003324.1 | + | 36868 | 0.67 | 0.611151 |
Target: 5'- uCAGCGCCUUCCGCU----UGGGGAa -3' miRNA: 3'- uGUUGUGGAAGGCGGgacaGCUCCUg -5' |
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12383 | 3' | -56 | NC_003324.1 | + | 29675 | 0.67 | 0.589294 |
Target: 5'- uGCAGgACgUUCUGCCCgagGaaUCGAGcGACg -3' miRNA: 3'- -UGUUgUGgAAGGCGGGa--C--AGCUC-CUG- -5' |
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12383 | 3' | -56 | NC_003324.1 | + | 56090 | 0.68 | 0.556798 |
Target: 5'- cACGGCGCgcUCCGCCCUGU-GGGuGCg -3' miRNA: 3'- -UGUUGUGgaAGGCGGGACAgCUCcUG- -5' |
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12383 | 3' | -56 | NC_003324.1 | + | 24081 | 0.68 | 0.556798 |
Target: 5'- aGCAGC-CCUaccgCCGCCCUaccagcgcGUCGAGcGCg -3' miRNA: 3'- -UGUUGuGGAa---GGCGGGA--------CAGCUCcUG- -5' |
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12383 | 3' | -56 | NC_003324.1 | + | 18389 | 0.68 | 0.546075 |
Target: 5'- gGCAGCGCUgaCgGaCCCUG-CGAGGAa -3' miRNA: 3'- -UGUUGUGGaaGgC-GGGACaGCUCCUg -5' |
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12383 | 3' | -56 | NC_003324.1 | + | 56509 | 0.68 | 0.567581 |
Target: 5'- cCGGCACCUUCCccucUCCUGcaaUGGGGGCg -3' miRNA: 3'- uGUUGUGGAAGGc---GGGACa--GCUCCUG- -5' |
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12383 | 3' | -56 | NC_003324.1 | + | 1674 | 0.68 | 0.578416 |
Target: 5'- cCAGCAUCUcgCgCGCCUUGUCGAGa-- -3' miRNA: 3'- uGUUGUGGAa-G-GCGGGACAGCUCcug -5' |
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12383 | 3' | -56 | NC_003324.1 | + | 25496 | 0.69 | 0.514335 |
Target: 5'- cGCAACGCCUUCUaCCC----GAGGACg -3' miRNA: 3'- -UGUUGUGGAAGGcGGGacagCUCCUG- -5' |
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12383 | 3' | -56 | NC_003324.1 | + | 30493 | 0.69 | 0.500813 |
Target: 5'- aGCAGCuggcccaaucggaaGCC-UCCGUauCCUgGUCGAGGGCg -3' miRNA: 3'- -UGUUG--------------UGGaAGGCG--GGA-CAGCUCCUG- -5' |
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12383 | 3' | -56 | NC_003324.1 | + | 16034 | 0.7 | 0.443549 |
Target: 5'- cCAACGCCcaCCGCCUUGUCGAu--- -3' miRNA: 3'- uGUUGUGGaaGGCGGGACAGCUccug -5' |
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12383 | 3' | -56 | NC_003324.1 | + | 14607 | 0.7 | 0.443549 |
Target: 5'- -gAGCGCCag-CGCCUUGUCGcGGACg -3' miRNA: 3'- ugUUGUGGaagGCGGGACAGCuCCUG- -5' |
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12383 | 3' | -56 | NC_003324.1 | + | 47174 | 0.7 | 0.433883 |
Target: 5'- uGCcGCACCUcgCCGCaCgUGUCGGGGuCu -3' miRNA: 3'- -UGuUGUGGAa-GGCG-GgACAGCUCCuG- -5' |
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12383 | 3' | -56 | NC_003324.1 | + | 48875 | 0.75 | 0.213073 |
Target: 5'- -uGGCACCUUCCGgCUUGUCGAagaaauacgaagGGGCg -3' miRNA: 3'- ugUUGUGGAAGGCgGGACAGCU------------CCUG- -5' |
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12383 | 3' | -56 | NC_003324.1 | + | 39685 | 1.1 | 0.000759 |
Target: 5'- aACAACACCUUCCGCCCUGUCGAGGACg -3' miRNA: 3'- -UGUUGUGGAAGGCGGGACAGCUCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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