miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12386 3' -55.7 NC_003324.1 + 12213 0.66 0.711344
Target:  5'- gAUGUUgUCgGUgaaauucccgGCCGAggCCGCGCGc -3'
miRNA:   3'- gUGCAAgAGgCAa---------CGGCUa-GGCGCGU- -5'
12386 3' -55.7 NC_003324.1 + 12328 0.66 0.700665
Target:  5'- aACGUcggCUCCGacaUUGUCGGcauugCCGCGCu -3'
miRNA:   3'- gUGCAa--GAGGC---AACGGCUa----GGCGCGu -5'
12386 3' -55.7 NC_003324.1 + 10669 0.67 0.646506
Target:  5'- gACGguugCCGUUGCCuGcAUCCGCuGCAc -3'
miRNA:   3'- gUGCaagaGGCAACGG-C-UAGGCG-CGU- -5'
12386 3' -55.7 NC_003324.1 + 27634 0.67 0.624679
Target:  5'- uGCGUgagCCGgcaGCCGAgcccgaaacaggUCCGCGCGc -3'
miRNA:   3'- gUGCAagaGGCaa-CGGCU------------AGGCGCGU- -5'
12386 3' -55.7 NC_003324.1 + 2715 0.67 0.624679
Target:  5'- gGCGgcagUCUCCaagcgauaGCCGAUCgCGCGCc -3'
miRNA:   3'- gUGCa---AGAGGcaa-----CGGCUAG-GCGCGu -5'
12386 3' -55.7 NC_003324.1 + 33362 0.67 0.624679
Target:  5'- uGCGUg----GUUGCCGGcUCCGCGCGc -3'
miRNA:   3'- gUGCAagaggCAACGGCU-AGGCGCGU- -5'
12386 3' -55.7 NC_003324.1 + 42223 0.68 0.59201
Target:  5'- cCAUGg--UCUGUUGCUGAUCCcCGCGg -3'
miRNA:   3'- -GUGCaagAGGCAACGGCUAGGcGCGU- -5'
12386 3' -55.7 NC_003324.1 + 37419 0.68 0.59201
Target:  5'- gCACGUUCU-UGUUGCuauCGAgcgcauugCCGCGCAc -3'
miRNA:   3'- -GUGCAAGAgGCAACG---GCUa-------GGCGCGU- -5'
12386 3' -55.7 NC_003324.1 + 42377 0.72 0.345049
Target:  5'- gCACGUggcaggcggcgcacUCagCGUUGCCGAcCCGCGCc -3'
miRNA:   3'- -GUGCA--------------AGagGCAACGGCUaGGCGCGu -5'
12386 3' -55.7 NC_003324.1 + 30760 0.73 0.323359
Target:  5'- gCugGUUUggcCCGgcgugGCgCGAUCCGCGCAg -3'
miRNA:   3'- -GugCAAGa--GGCaa---CG-GCUAGGCGCGU- -5'
12386 3' -55.7 NC_003324.1 + 43079 0.85 0.047769
Target:  5'- --gGUUCUCCGUUGCCGAcCCGCGUg -3'
miRNA:   3'- gugCAAGAGGCAACGGCUaGGCGCGu -5'
12386 3' -55.7 NC_003324.1 + 42845 1.08 0.001199
Target:  5'- gCACGUUCUCCGUUGCCGAUCCGCGCAu -3'
miRNA:   3'- -GUGCAAGAGGCAACGGCUAGGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.