miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12386 5' -51.2 NC_003324.1 + 23255 0.66 0.930608
Target:  5'- aCCGCGCUcgccgaccauaccgUgGGCGccggcaagACGUUUGCCGCc -3'
miRNA:   3'- gGGUGCGA--------------AgUUGU--------UGCAGAUGGCGu -5'
12386 5' -51.2 NC_003324.1 + 16965 0.66 0.926583
Target:  5'- aUCgGCGCacaUCAACGAUagUUGCCGCAa -3'
miRNA:   3'- -GGgUGCGa--AGUUGUUGcaGAUGGCGU- -5'
12386 5' -51.2 NC_003324.1 + 32589 0.66 0.920589
Target:  5'- cCCCGCGauuggagCGACAuCGUCgacACCGUg -3'
miRNA:   3'- -GGGUGCgaa----GUUGUuGCAGa--UGGCGu -5'
12386 5' -51.2 NC_003324.1 + 49643 0.66 0.920589
Target:  5'- aUCGCaaCUUCGACGACG-CUGCCGa- -3'
miRNA:   3'- gGGUGc-GAAGUUGUUGCaGAUGGCgu -5'
12386 5' -51.2 NC_003324.1 + 13344 0.66 0.920589
Target:  5'- gCCGCGCcggacCAaacauGCGACGcgCUGCCGUAc -3'
miRNA:   3'- gGGUGCGaa---GU-----UGUUGCa-GAUGGCGU- -5'
12386 5' -51.2 NC_003324.1 + 51216 0.66 0.913664
Target:  5'- cCCCAUGCUUUAcuccggcGCGAUGgu--CCGCGc -3'
miRNA:   3'- -GGGUGCGAAGU-------UGUUGCagauGGCGU- -5'
12386 5' -51.2 NC_003324.1 + 54268 0.66 0.907741
Target:  5'- cCUCGCGCU---GCGugGUCacagACUGCAa -3'
miRNA:   3'- -GGGUGCGAaguUGUugCAGa---UGGCGU- -5'
12386 5' -51.2 NC_003324.1 + 26580 0.66 0.907741
Target:  5'- gCCACGCaaUUCGACGguAUGUCgagcGCUGCc -3'
miRNA:   3'- gGGUGCG--AAGUUGU--UGCAGa---UGGCGu -5'
12386 5' -51.2 NC_003324.1 + 34471 0.66 0.907741
Target:  5'- uUCGCGCUUCuGCGuCGUCUuguugGCCgGCGu -3'
miRNA:   3'- gGGUGCGAAGuUGUuGCAGA-----UGG-CGU- -5'
12386 5' -51.2 NC_003324.1 + 18039 0.66 0.907741
Target:  5'- gCCAUGCgauaGGCGGCGagUGCCGUc -3'
miRNA:   3'- gGGUGCGaag-UUGUUGCagAUGGCGu -5'
12386 5' -51.2 NC_003324.1 + 50395 0.66 0.900891
Target:  5'- uCCCGgGCcgCGACAuguuCGgugaaccCUGCCGCAa -3'
miRNA:   3'- -GGGUgCGaaGUUGUu---GCa------GAUGGCGU- -5'
12386 5' -51.2 NC_003324.1 + 9071 0.67 0.886356
Target:  5'- gUCCACGCcaCAcgguCAACGUgCUGCCGaCGc -3'
miRNA:   3'- -GGGUGCGaaGUu---GUUGCA-GAUGGC-GU- -5'
12386 5' -51.2 NC_003324.1 + 33422 0.67 0.878681
Target:  5'- gCCCGagcCGCUUCAuCGGCGUUguCCGUg -3'
miRNA:   3'- -GGGU---GCGAAGUuGUUGCAGauGGCGu -5'
12386 5' -51.2 NC_003324.1 + 33665 0.67 0.878681
Target:  5'- uUCUACGC-UCGAUAcgccuGCG-CUGCCGCc -3'
miRNA:   3'- -GGGUGCGaAGUUGU-----UGCaGAUGGCGu -5'
12386 5' -51.2 NC_003324.1 + 13796 0.67 0.870741
Target:  5'- aUCCACGCcUCAACuccuuCGUCU-CCGa- -3'
miRNA:   3'- -GGGUGCGaAGUUGuu---GCAGAuGGCgu -5'
12386 5' -51.2 NC_003324.1 + 23691 0.67 0.870741
Target:  5'- gCCGgGCUUCAcauCGAUGUCgACUGCc -3'
miRNA:   3'- gGGUgCGAAGUu--GUUGCAGaUGGCGu -5'
12386 5' -51.2 NC_003324.1 + 39166 0.67 0.870741
Target:  5'- gUCCGCGCgcggCGAC-ACGUUgaauugGCUGCAc -3'
miRNA:   3'- -GGGUGCGaa--GUUGuUGCAGa-----UGGCGU- -5'
12386 5' -51.2 NC_003324.1 + 48145 0.67 0.865854
Target:  5'- aCCCAagGCUUCAugcgacauugcagcgACGugGUCccuaucgGCCGCGu -3'
miRNA:   3'- -GGGUg-CGAAGU---------------UGUugCAGa------UGGCGU- -5'
12386 5' -51.2 NC_003324.1 + 28686 0.67 0.862544
Target:  5'- gCCACGagggCGACAGCGggCggaaGCCGCGa -3'
miRNA:   3'- gGGUGCgaa-GUUGUUGCa-Ga---UGGCGU- -5'
12386 5' -51.2 NC_003324.1 + 21272 0.68 0.854097
Target:  5'- gCCCgACGCUgccgcuuucaucUCGGCcGCGUUcGCCGCc -3'
miRNA:   3'- -GGG-UGCGA------------AGUUGuUGCAGaUGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.