miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12387 3' -55.6 NC_003324.1 + 43279 0.66 0.73761
Target:  5'- -uUUCUCaaggauuuCGCCgacGCCUCGCAGgCGCu -3'
miRNA:   3'- guAGGAGcu------GUGGa--UGGAGCGUC-GCG- -5'
12387 3' -55.6 NC_003324.1 + 32393 0.66 0.73761
Target:  5'- --cUCUCG-CACC-ACCUCgGCcGCGCu -3'
miRNA:   3'- guaGGAGCuGUGGaUGGAG-CGuCGCG- -5'
12387 3' -55.6 NC_003324.1 + 44069 0.66 0.73761
Target:  5'- cCAUCCgcucgUCGGuguCCUGCUUgCGCAGCGa -3'
miRNA:   3'- -GUAGG-----AGCUgu-GGAUGGA-GCGUCGCg -5'
12387 3' -55.6 NC_003324.1 + 36602 0.66 0.727121
Target:  5'- -uUCCUCGAuCGCg-ACCUUGUgcccGCGCg -3'
miRNA:   3'- guAGGAGCU-GUGgaUGGAGCGu---CGCG- -5'
12387 3' -55.6 NC_003324.1 + 42963 0.66 0.727121
Target:  5'- uCGUUCUCGGuCGCagauCCUCGCGG-GCc -3'
miRNA:   3'- -GUAGGAGCU-GUGgau-GGAGCGUCgCG- -5'
12387 3' -55.6 NC_003324.1 + 53370 0.66 0.723956
Target:  5'- uCAUCUUCGGCACUgagcagACCuuuuugaucuggcaUCGCggucacGGCGCc -3'
miRNA:   3'- -GUAGGAGCUGUGGa-----UGG--------------AGCG------UCGCG- -5'
12387 3' -55.6 NC_003324.1 + 14602 0.66 0.716539
Target:  5'- cCAgcgCCUUgucgcgGACGcCCUGCCgCGCAGUGUu -3'
miRNA:   3'- -GUa--GGAG------CUGU-GGAUGGaGCGUCGCG- -5'
12387 3' -55.6 NC_003324.1 + 43151 0.66 0.715476
Target:  5'- aCAUUCUCGGCGuCCUgccgugggaugacACCUCGCGaacCGUu -3'
miRNA:   3'- -GUAGGAGCUGU-GGA-------------UGGAGCGUc--GCG- -5'
12387 3' -55.6 NC_003324.1 + 48900 0.66 0.705874
Target:  5'- --aCCUCGuCGCCcccauugGCCUCGguG-GCa -3'
miRNA:   3'- guaGGAGCuGUGGa------UGGAGCguCgCG- -5'
12387 3' -55.6 NC_003324.1 + 44004 0.66 0.705874
Target:  5'- -cUCCUCGGCugCcGCCgggaucaUGCcgAGCGCu -3'
miRNA:   3'- guAGGAGCUGugGaUGGa------GCG--UCGCG- -5'
12387 3' -55.6 NC_003324.1 + 51802 0.66 0.705874
Target:  5'- --cCCUCGGCGauugCgucgGCCUCGCugauauccugcaGGCGCu -3'
miRNA:   3'- guaGGAGCUGUg---Ga---UGGAGCG------------UCGCG- -5'
12387 3' -55.6 NC_003324.1 + 14369 0.66 0.695138
Target:  5'- gUAUCCaCGGCugCUGCCaaucaacgCGCcgcaaccgAGCGCg -3'
miRNA:   3'- -GUAGGaGCUGugGAUGGa-------GCG--------UCGCG- -5'
12387 3' -55.6 NC_003324.1 + 2656 0.66 0.684341
Target:  5'- aCGUCaUCGAC-CUUGCCcuUC-CAGCGCg -3'
miRNA:   3'- -GUAGgAGCUGuGGAUGG--AGcGUCGCG- -5'
12387 3' -55.6 NC_003324.1 + 19164 0.66 0.684341
Target:  5'- --gCCgCGAgCGCCUACC--GUAGCGCg -3'
miRNA:   3'- guaGGaGCU-GUGGAUGGagCGUCGCG- -5'
12387 3' -55.6 NC_003324.1 + 8569 0.66 0.684341
Target:  5'- -cUCCUCGAUcagcuccgGCC-ACCaUCGgGGCGUa -3'
miRNA:   3'- guAGGAGCUG--------UGGaUGG-AGCgUCGCG- -5'
12387 3' -55.6 NC_003324.1 + 24381 0.67 0.673496
Target:  5'- gCGUCCgCGACGCCUucGCCaagcucCGCcGUGCc -3'
miRNA:   3'- -GUAGGaGCUGUGGA--UGGa-----GCGuCGCG- -5'
12387 3' -55.6 NC_003324.1 + 41051 0.67 0.673496
Target:  5'- --gCCggCGAUA---GCCUUGCAGCGCg -3'
miRNA:   3'- guaGGa-GCUGUggaUGGAGCGUCGCG- -5'
12387 3' -55.6 NC_003324.1 + 49067 0.67 0.673496
Target:  5'- cCAUCCggcUCuGCACCgggGCCgaaaGCGGCGUc -3'
miRNA:   3'- -GUAGG---AGcUGUGGa--UGGag--CGUCGCG- -5'
12387 3' -55.6 NC_003324.1 + 9 0.67 0.669146
Target:  5'- uGUCCUCGACcuggugcucagucCCaACCUCGCAGaaGUa -3'
miRNA:   3'- gUAGGAGCUGu------------GGaUGGAGCGUCg-CG- -5'
12387 3' -55.6 NC_003324.1 + 30094 0.67 0.662611
Target:  5'- -uUCCUCGACGCCU---UCGguCAGCGa -3'
miRNA:   3'- guAGGAGCUGUGGAuggAGC--GUCGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.