miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12387 5' -59.7 NC_003324.1 + 30454 0.66 0.499465
Target:  5'- gGGCGGCauGGCCGAGGgcgacgccaucaAGGcucugacggagGAUGcAGCa -3'
miRNA:   3'- gCCGCCG--UCGGCUCC------------UCC-----------UUAC-UCGc -5'
12387 5' -59.7 NC_003324.1 + 54585 0.67 0.431657
Target:  5'- gGGC-GCGGCCGAGGuGGcugaacuacgucGAUcGAGCa -3'
miRNA:   3'- gCCGcCGUCGGCUCCuCC------------UUA-CUCGc -5'
12387 5' -59.7 NC_003324.1 + 40119 0.67 0.422412
Target:  5'- aCGGUGGaCGGCCGAcGAgcuGGGAUGAucGCa -3'
miRNA:   3'- -GCCGCC-GUCGGCUcCU---CCUUACU--CGc -5'
12387 5' -59.7 NC_003324.1 + 45980 0.67 0.422412
Target:  5'- gCGGCGGC-GCCGAaucGAGGAGcGuGCc -3'
miRNA:   3'- -GCCGCCGuCGGCUc--CUCCUUaCuCGc -5'
12387 5' -59.7 NC_003324.1 + 2828 0.68 0.404284
Target:  5'- -uGCGGUAuuuucGCCGGGcGAGGGG-GAGCGu -3'
miRNA:   3'- gcCGCCGU-----CGGCUC-CUCCUUaCUCGC- -5'
12387 5' -59.7 NC_003324.1 + 21938 0.68 0.395406
Target:  5'- aGGCcaaGGCcGCCGAGGAGGcccggcUGcGCGa -3'
miRNA:   3'- gCCG---CCGuCGGCUCCUCCuu----ACuCGC- -5'
12387 5' -59.7 NC_003324.1 + 19584 0.68 0.386655
Target:  5'- gGGCGaGCucgcugaaauAGuuGAGGGGGAugguuuUGAGCa -3'
miRNA:   3'- gCCGC-CG----------UCggCUCCUCCUu-----ACUCGc -5'
12387 5' -59.7 NC_003324.1 + 38358 0.68 0.36954
Target:  5'- gGGCGGCGcuggucGCCGucgugcGGGAGGAAguGGUGg -3'
miRNA:   3'- gCCGCCGU------CGGC------UCCUCCUUacUCGC- -5'
12387 5' -59.7 NC_003324.1 + 31734 0.68 0.368698
Target:  5'- aCGGCGGCAacuucuccggcgcGCCGaAGGAagugcGcGAGUGGGUGc -3'
miRNA:   3'- -GCCGCCGU-------------CGGC-UCCU-----C-CUUACUCGC- -5'
12387 5' -59.7 NC_003324.1 + 9547 0.69 0.344857
Target:  5'- gGGUGGuCAGCCGgaguGGGucuGGggUG-GCGa -3'
miRNA:   3'- gCCGCC-GUCGGC----UCCu--CCuuACuCGC- -5'
12387 5' -59.7 NC_003324.1 + 53482 0.7 0.29912
Target:  5'- cCGcGCGGaAGCCGAGGccGAAUGccGGCGa -3'
miRNA:   3'- -GC-CGCCgUCGGCUCCucCUUAC--UCGC- -5'
12387 5' -59.7 NC_003324.1 + 37241 0.71 0.260799
Target:  5'- -cGCGGCgcaaggaagacgacaAGCCGgcgGGGAGGAA-GAGCGa -3'
miRNA:   3'- gcCGCCG---------------UCGGC---UCCUCCUUaCUCGC- -5'
12387 5' -59.7 NC_003324.1 + 37461 0.72 0.227729
Target:  5'- gGGauGgAGCCGGGGucuccGGGAUGGGCGa -3'
miRNA:   3'- gCCgcCgUCGGCUCCu----CCUUACUCGC- -5'
12387 5' -59.7 NC_003324.1 + 29536 0.72 0.222008
Target:  5'- aGGCGGCcgugucaucGUCGAGGGGGAgaAUG-GCGa -3'
miRNA:   3'- gCCGCCGu--------CGGCUCCUCCU--UACuCGC- -5'
12387 5' -59.7 NC_003324.1 + 27019 0.74 0.157812
Target:  5'- aCGGCuGCAGgcgcucuCCGAaGAGGAAUGGGCGa -3'
miRNA:   3'- -GCCGcCGUC-------GGCUcCUCCUUACUCGC- -5'
12387 5' -59.7 NC_003324.1 + 40320 0.75 0.124283
Target:  5'- aGGCGGCAGUCGAGcGGGAGccAGCa -3'
miRNA:   3'- gCCGCCGUCGGCUCcUCCUUacUCGc -5'
12387 5' -59.7 NC_003324.1 + 44078 1.09 0.000404
Target:  5'- cCGGCGGCAGCCGAGGAGGAAUGAGCGa -3'
miRNA:   3'- -GCCGCCGUCGGCUCCUCCUUACUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.