miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12388 3' -56.2 NC_003324.1 + 77 0.76 0.175354
Target:  5'- cUUAuGCGCCGGCCGUCgAGCuGACCa- -3'
miRNA:   3'- aAGUuUGCGGCCGGUAG-UCG-CUGGcu -5'
12388 3' -56.2 NC_003324.1 + 21847 0.67 0.599468
Target:  5'- gUUCGcGCaGCCgGGCCuccUCGGCGGCCu- -3'
miRNA:   3'- -AAGUuUG-CGG-CCGGu--AGUCGCUGGcu -5'
12388 3' -56.2 NC_003324.1 + 5208 0.66 0.621461
Target:  5'- cUCuauCGCUGGCg--CGGCGACCGc -3'
miRNA:   3'- aAGuuuGCGGCCGguaGUCGCUGGCu -5'
12388 3' -56.2 NC_003324.1 + 4834 0.66 0.62807
Target:  5'- uUUCAGugacuaugGCGCCGGCaacaacguuGCGGCCGGu -3'
miRNA:   3'- -AAGUU--------UGCGGCCGguagu----CGCUGGCU- -5'
12388 3' -56.2 NC_003324.1 + 47621 0.66 0.632476
Target:  5'- ----cACGCCGcGCaugaCGGCGACCGGg -3'
miRNA:   3'- aaguuUGCGGC-CGgua-GUCGCUGGCU- -5'
12388 3' -56.2 NC_003324.1 + 27649 0.66 0.632476
Target:  5'- cUCGAAcCGCUuGCCGUUcGCGACCa- -3'
miRNA:   3'- aAGUUU-GCGGcCGGUAGuCGCUGGcu -5'
12388 3' -56.2 NC_003324.1 + 28898 0.66 0.632476
Target:  5'- ------gGCCGGCCucguccuUCGcuGCGACCGAu -3'
miRNA:   3'- aaguuugCGGCCGGu------AGU--CGCUGGCU- -5'
12388 3' -56.2 NC_003324.1 + 11143 0.66 0.654496
Target:  5'- gUCcgcuuCGCCGGUCu--GGCGGCCGGc -3'
miRNA:   3'- aAGuuu--GCGGCCGGuagUCGCUGGCU- -5'
12388 3' -56.2 NC_003324.1 + 32474 0.66 0.66548
Target:  5'- gUCGccuuCGCCGGCagccUCGGCGAUCa- -3'
miRNA:   3'- aAGUuu--GCGGCCGgu--AGUCGCUGGcu -5'
12388 3' -56.2 NC_003324.1 + 48748 0.67 0.588509
Target:  5'- -gCAGGCuGCaGGCCAUCAGCGAagCGc -3'
miRNA:   3'- aaGUUUG-CGgCCGGUAGUCGCUg-GCu -5'
12388 3' -56.2 NC_003324.1 + 42669 0.67 0.56671
Target:  5'- -cCAuuCGCCgGGCCAcCAG-GACCGGc -3'
miRNA:   3'- aaGUuuGCGG-CCGGUaGUCgCUGGCU- -5'
12388 3' -56.2 NC_003324.1 + 42068 0.68 0.549419
Target:  5'- aUCAAGCGCaCGGauuacggcaacgagcCUAUCAGCaggGGCCGGg -3'
miRNA:   3'- aAGUUUGCG-GCC---------------GGUAGUCG---CUGGCU- -5'
12388 3' -56.2 NC_003324.1 + 42862 0.76 0.175354
Target:  5'- aUUCGAGgcUGCCGGCCGgcccgcgaggaUCuGCGACCGAg -3'
miRNA:   3'- -AAGUUU--GCGGCCGGU-----------AGuCGCUGGCU- -5'
12388 3' -56.2 NC_003324.1 + 51700 0.72 0.303439
Target:  5'- gUCGAGCGCCuGCaggaUAUCAGCGagGCCGAc -3'
miRNA:   3'- aAGUUUGCGGcCG----GUAGUCGC--UGGCU- -5'
12388 3' -56.2 NC_003324.1 + 55376 0.69 0.442266
Target:  5'- aUUCGAGCGCCuuauccggaaGCCAaaauUCAGCG-CCGAa -3'
miRNA:   3'- -AAGUUUGCGGc---------CGGU----AGUCGCuGGCU- -5'
12388 3' -56.2 NC_003324.1 + 4472 0.69 0.462008
Target:  5'- aUUCAGGCGCCGGaugcggcucaCAUCcucuacggcGGCGACgCGAc -3'
miRNA:   3'- -AAGUUUGCGGCCg---------GUAG---------UCGCUG-GCU- -5'
12388 3' -56.2 NC_003324.1 + 21945 0.69 0.472051
Target:  5'- --uGGAUGCgGGCCucucGUCGGCGGCgCGAu -3'
miRNA:   3'- aagUUUGCGgCCGG----UAGUCGCUG-GCU- -5'
12388 3' -56.2 NC_003324.1 + 23838 0.68 0.509077
Target:  5'- gUCGGACGuuucguaguuuCCGGCCGgcgucuuguagagCAGCGgACCGAg -3'
miRNA:   3'- aAGUUUGC-----------GGCCGGUa------------GUCGC-UGGCU- -5'
12388 3' -56.2 NC_003324.1 + 17195 0.68 0.513268
Target:  5'- gUCGGACG-CGGCUuUCGGCGuucuugagcGCCGAg -3'
miRNA:   3'- aAGUUUGCgGCCGGuAGUCGC---------UGGCU- -5'
12388 3' -56.2 NC_003324.1 + 38735 0.68 0.534427
Target:  5'- -cCAGGCGCgcuUGGCCucugaaAUCgGGCGGCCGAu -3'
miRNA:   3'- aaGUUUGCG---GCCGG------UAG-UCGCUGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.