miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12388 3' -56.2 NC_003324.1 + 27649 0.66 0.632476
Target:  5'- cUCGAAcCGCUuGCCGUUcGCGACCa- -3'
miRNA:   3'- aAGUUU-GCGGcCGGUAGuCGCUGGcu -5'
12388 3' -56.2 NC_003324.1 + 27956 0.68 0.534427
Target:  5'- -gUAAugGCCGGCUAcgcCAGCGAggaCGAa -3'
miRNA:   3'- aaGUUugCGGCCGGUa--GUCGCUg--GCU- -5'
12388 3' -56.2 NC_003324.1 + 28898 0.66 0.632476
Target:  5'- ------gGCCGGCCucguccuUCGcuGCGACCGAu -3'
miRNA:   3'- aaguuugCGGCCGGu------AGU--CGCUGGCU- -5'
12388 3' -56.2 NC_003324.1 + 29424 0.75 0.206062
Target:  5'- aUCAggUGCCGGUCgaaaaccucucgGUCAGCGGCCu- -3'
miRNA:   3'- aAGUuuGCGGCCGG------------UAGUCGCUGGcu -5'
12388 3' -56.2 NC_003324.1 + 29538 0.69 0.486295
Target:  5'- -cCAGGCgGCCGuGUCAUCgucgagggggagaauGGCGACCGGu -3'
miRNA:   3'- aaGUUUG-CGGC-CGGUAG---------------UCGCUGGCU- -5'
12388 3' -56.2 NC_003324.1 + 29991 0.66 0.654496
Target:  5'- ----cGCGCCguccagcauGGCCAgCAGCGcGCCGAa -3'
miRNA:   3'- aaguuUGCGG---------CCGGUaGUCGC-UGGCU- -5'
12388 3' -56.2 NC_003324.1 + 30164 0.67 0.577587
Target:  5'- --aAGGCGUCGaggaaGCCG-CAGCGGCCGGu -3'
miRNA:   3'- aagUUUGCGGC-----CGGUaGUCGCUGGCU- -5'
12388 3' -56.2 NC_003324.1 + 31105 0.68 0.502818
Target:  5'- -cCGAccGCGCCGGUCGcuaccaAGCGAUCGAc -3'
miRNA:   3'- aaGUU--UGCGGCCGGUag----UCGCUGGCU- -5'
12388 3' -56.2 NC_003324.1 + 32474 0.66 0.66548
Target:  5'- gUCGccuuCGCCGGCagccUCGGCGAUCa- -3'
miRNA:   3'- aAGUuu--GCGGCCGgu--AGUCGCUGGcu -5'
12388 3' -56.2 NC_003324.1 + 38735 0.68 0.534427
Target:  5'- -cCAGGCGCgcuUGGCCucugaaAUCgGGCGGCCGAu -3'
miRNA:   3'- aaGUUUGCG---GCCGG------UAG-UCGCUGGCU- -5'
12388 3' -56.2 NC_003324.1 + 42068 0.68 0.549419
Target:  5'- aUCAAGCGCaCGGauuacggcaacgagcCUAUCAGCaggGGCCGGg -3'
miRNA:   3'- aAGUUUGCG-GCC---------------GGUAGUCG---CUGGCU- -5'
12388 3' -56.2 NC_003324.1 + 42669 0.67 0.56671
Target:  5'- -cCAuuCGCCgGGCCAcCAG-GACCGGc -3'
miRNA:   3'- aaGUuuGCGG-CCGGUaGUCgCUGGCU- -5'
12388 3' -56.2 NC_003324.1 + 42862 0.76 0.175354
Target:  5'- aUUCGAGgcUGCCGGCCGgcccgcgaggaUCuGCGACCGAg -3'
miRNA:   3'- -AAGUUU--GCGGCCGGU-----------AGuCGCUGGCU- -5'
12388 3' -56.2 NC_003324.1 + 43010 0.67 0.577587
Target:  5'- -aCGAGacCGCCGGCg--CAGUGACCGc -3'
miRNA:   3'- aaGUUU--GCGGCCGguaGUCGCUGGCu -5'
12388 3' -56.2 NC_003324.1 + 44528 1.07 0.001117
Target:  5'- uUUCAAACGCCGGCCAUCAGCGACCGAa -3'
miRNA:   3'- -AAGUUUGCGGCCGGUAGUCGCUGGCU- -5'
12388 3' -56.2 NC_003324.1 + 47621 0.66 0.632476
Target:  5'- ----cACGCCGcGCaugaCGGCGACCGGg -3'
miRNA:   3'- aaguuUGCGGC-CGgua-GUCGCUGGCU- -5'
12388 3' -56.2 NC_003324.1 + 47945 0.68 0.513268
Target:  5'- gUCcuGACGCCGGUCAgguacgguuUCAGCGGCa-- -3'
miRNA:   3'- aAGu-UUGCGGCCGGU---------AGUCGCUGgcu -5'
12388 3' -56.2 NC_003324.1 + 47985 0.72 0.311054
Target:  5'- -gCGGAUaaGCCGGCCAUCGGCGcaGCaCGGu -3'
miRNA:   3'- aaGUUUG--CGGCCGGUAGUCGC--UG-GCU- -5'
12388 3' -56.2 NC_003324.1 + 48748 0.67 0.588509
Target:  5'- -gCAGGCuGCaGGCCAUCAGCGAagCGc -3'
miRNA:   3'- aaGUUUG-CGgCCGGUAGUCGCUg-GCu -5'
12388 3' -56.2 NC_003324.1 + 49205 0.7 0.404265
Target:  5'- aUCGAGCgGCCcGCCAUCuuGGCGAUCGc -3'
miRNA:   3'- aAGUUUG-CGGcCGGUAG--UCGCUGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.