miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12388 5' -61.3 NC_003324.1 + 54939 0.66 0.427189
Target:  5'- aUCCGG-GCCUGCGgGGUcggaaccuuGAGGGCUg -3'
miRNA:   3'- cGGGCCaCGGGCGUgUCGu--------CUCCUGA- -5'
12388 5' -61.3 NC_003324.1 + 49810 0.66 0.42352
Target:  5'- cGCCCGcugaaccaucccGCCUGCAgGGCAGcGGGAUa -3'
miRNA:   3'- -CGGGCca----------CGGGCGUgUCGUC-UCCUGa -5'
12388 5' -61.3 NC_003324.1 + 32220 0.66 0.418051
Target:  5'- aGCCCGGggcgGCCCGgCccgaGGCGGAGaccaaGGCa -3'
miRNA:   3'- -CGGGCCa---CGGGC-Gug--UCGUCUC-----CUGa -5'
12388 5' -61.3 NC_003324.1 + 25692 0.66 0.409034
Target:  5'- aGCC--GUGCCgGCGCAGCAGcGGcCg -3'
miRNA:   3'- -CGGgcCACGGgCGUGUCGUCuCCuGa -5'
12388 5' -61.3 NC_003324.1 + 10315 0.66 0.400138
Target:  5'- -gCCGcGUGCauCCGCuccuagaaACAGUAGGGGGCg -3'
miRNA:   3'- cgGGC-CACG--GGCG--------UGUCGUCUCCUGa -5'
12388 5' -61.3 NC_003324.1 + 14498 0.66 0.390497
Target:  5'- -gCCGGUGCagccaacaCUGCGCGGCAGGGcguccgcGACa -3'
miRNA:   3'- cgGGCCACG--------GGCGUGUCGUCUC-------CUGa -5'
12388 5' -61.3 NC_003324.1 + 54875 0.67 0.365819
Target:  5'- gGCCCGGaUGCUCGCGaugucggcgcccgcaAGCGagagauuGAGGGCg -3'
miRNA:   3'- -CGGGCC-ACGGGCGUg--------------UCGU-------CUCCUGa -5'
12388 5' -61.3 NC_003324.1 + 23535 0.67 0.365819
Target:  5'- -aUCGGUGCCC-CACAGCGuGGcGGCg -3'
miRNA:   3'- cgGGCCACGGGcGUGUCGUcUC-CUGa -5'
12388 5' -61.3 NC_003324.1 + 47703 0.67 0.365819
Target:  5'- gGCCCGGUcGCCgucaUGCGCGGCGuGGuaaagcucGGACg -3'
miRNA:   3'- -CGGGCCA-CGG----GCGUGUCGU-CU--------CCUGa -5'
12388 5' -61.3 NC_003324.1 + 11155 0.67 0.349437
Target:  5'- gGUCUGGcggccgGCUCGCACAGCGuuGAGGuGCg -3'
miRNA:   3'- -CGGGCCa-----CGGGCGUGUCGU--CUCC-UGa -5'
12388 5' -61.3 NC_003324.1 + 57405 0.67 0.341444
Target:  5'- gGCCC-GUGUCCuCACuGCuGGAGGGCUc -3'
miRNA:   3'- -CGGGcCACGGGcGUGuCG-UCUCCUGA- -5'
12388 5' -61.3 NC_003324.1 + 2678 0.68 0.303481
Target:  5'- aGCgCGGUGgCCGCuuCGGCA-AGGGCa -3'
miRNA:   3'- -CGgGCCACgGGCGu-GUCGUcUCCUGa -5'
12388 5' -61.3 NC_003324.1 + 41186 0.71 0.179197
Target:  5'- uGCCCGaG-GUCCGCuugcCAGCGGAuGGACa -3'
miRNA:   3'- -CGGGC-CaCGGGCGu---GUCGUCU-CCUGa -5'
12388 5' -61.3 NC_003324.1 + 27796 0.72 0.153055
Target:  5'- gGUUCGGUGCCCGCGauaaGGCcGAGGcGCa -3'
miRNA:   3'- -CGGGCCACGGGCGUg---UCGuCUCC-UGa -5'
12388 5' -61.3 NC_003324.1 + 3560 0.74 0.120298
Target:  5'- cGCuUCGGUggcGCCCGCcauGCAGCAGAGcGACa -3'
miRNA:   3'- -CG-GGCCA---CGGGCG---UGUCGUCUC-CUGa -5'
12388 5' -61.3 NC_003324.1 + 44493 1.09 0.00024
Target:  5'- cGCCCGGUGCCCGCACAGCAGAGGACUg -3'
miRNA:   3'- -CGGGCCACGGGCGUGUCGUCUCCUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.