miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12389 5' -54.9 NC_003324.1 + 23814 0.69 0.574519
Target:  5'- aCGUcGCAGC-UCUUCGUGAcguGCaGCCg -3'
miRNA:   3'- gGCGuCGUCGuAGGAGCACU---CGaUGG- -5'
12389 5' -54.9 NC_003324.1 + 28469 0.68 0.607265
Target:  5'- cCCGCuguugGGCGGUAUCCgUUG-GAGCUuugggacaagGCCg -3'
miRNA:   3'- -GGCG-----UCGUCGUAGG-AGCaCUCGA----------UGG- -5'
12389 5' -54.9 NC_003324.1 + 54316 0.68 0.629217
Target:  5'- aCCGguGCcGCGcCUUCGcuuUGAGCaGCCg -3'
miRNA:   3'- -GGCguCGuCGUaGGAGC---ACUCGaUGG- -5'
12389 5' -54.9 NC_003324.1 + 8163 0.68 0.629217
Target:  5'- aCCGUGGCAGCcauggucaccUCCUCGacgaAGUUGCCc -3'
miRNA:   3'- -GGCGUCGUCGu---------AGGAGCac--UCGAUGG- -5'
12389 5' -54.9 NC_003324.1 + 13514 0.68 0.642398
Target:  5'- uCCGCGGCGGCGgugcacuggacaCCUCaGUcgccuguaucuggccGAGCUGCa -3'
miRNA:   3'- -GGCGUCGUCGUa-----------GGAG-CA---------------CUCGAUGg -5'
12389 5' -54.9 NC_003324.1 + 21081 0.67 0.673071
Target:  5'- gCGCGGCcaucauugcGGCgAUCCgaCGUGAGCuUAUCg -3'
miRNA:   3'- gGCGUCG---------UCG-UAGGa-GCACUCG-AUGG- -5'
12389 5' -54.9 NC_003324.1 + 4805 0.67 0.683965
Target:  5'- gCCGUAGCAGCcgCCUUcUGgauuuccagccAGCcGCCc -3'
miRNA:   3'- -GGCGUCGUCGuaGGAGcAC-----------UCGaUGG- -5'
12389 5' -54.9 NC_003324.1 + 45981 0.67 0.705593
Target:  5'- -aGCGGCGGCG-CCgaaUCGagGAGCgUGCCc -3'
miRNA:   3'- ggCGUCGUCGUaGG---AGCa-CUCG-AUGG- -5'
12389 5' -54.9 NC_003324.1 + 1851 0.66 0.726935
Target:  5'- gCUGCAGCAGCAgCUUCauucuGGCgGCCg -3'
miRNA:   3'- -GGCGUCGUCGUaGGAGcac--UCGaUGG- -5'
12389 5' -54.9 NC_003324.1 + 20309 0.66 0.726935
Target:  5'- cCCG-GGCuGCAuUCCaUC-UGGGCUGCCg -3'
miRNA:   3'- -GGCgUCGuCGU-AGG-AGcACUCGAUGG- -5'
12389 5' -54.9 NC_003324.1 + 38648 0.66 0.726935
Target:  5'- aCCGCAucacGC-GCGUgCCcuaUCGcccgGAGCUGCCg -3'
miRNA:   3'- -GGCGU----CGuCGUA-GG---AGCa---CUCGAUGG- -5'
12389 5' -54.9 NC_003324.1 + 53293 0.66 0.737471
Target:  5'- uCCGCAGCuu--UCgUUGUGAagccggccgccaGCUACCa -3'
miRNA:   3'- -GGCGUCGucguAGgAGCACU------------CGAUGG- -5'
12389 5' -54.9 NC_003324.1 + 6976 0.66 0.737471
Target:  5'- aCCGCGGUGGCGaagagCUgauagUGUGAuGUUGCCu -3'
miRNA:   3'- -GGCGUCGUCGUa----GGa----GCACU-CGAUGG- -5'
12389 5' -54.9 NC_003324.1 + 25294 0.66 0.746862
Target:  5'- aCCGuCAGuCGGCGcaggcaacuUCCUUggucucaugccugGUGAGCUGCg -3'
miRNA:   3'- -GGC-GUC-GUCGU---------AGGAG-------------CACUCGAUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.