miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1239 3' -57.2 NC_001271.1 + 5881 0.66 0.523502
Target:  5'- -aGUCUGCCAGcACAUCGUUGuucucauaggugauaACCAu- -3'
miRNA:   3'- ggCAGACGGUC-UGUGGCGAC---------------UGGUca -5'
1239 3' -57.2 NC_001271.1 + 11075 0.69 0.346457
Target:  5'- -aGUCUGCUGGucACGCUGCUGGCgaAGUa -3'
miRNA:   3'- ggCAGACGGUC--UGUGGCGACUGg-UCA- -5'
1239 3' -57.2 NC_001271.1 + 37104 0.71 0.256273
Target:  5'- uCCGUUaGCCAGACACCG--GGCCAu- -3'
miRNA:   3'- -GGCAGaCGGUCUGUGGCgaCUGGUca -5'
1239 3' -57.2 NC_001271.1 + 13445 1.08 0.000507
Target:  5'- uCCGUCUGCCAGACACCGCUGACCAGUu -3'
miRNA:   3'- -GGCAGACGGUCUGUGGCGACUGGUCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.