miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12391 5' -59.4 NC_003324.1 + 20174 0.69 0.319978
Target:  5'- --cGCuGCCGGCAGCcucGGUCaGAGAGgCg -3'
miRNA:   3'- cuaUG-CGGCCGUCG---CCAG-CUCUCgGa -5'
12391 5' -59.4 NC_003324.1 + 44891 0.68 0.403322
Target:  5'- cGGUACGCCGG-GGCG--CGGGGGCUg -3'
miRNA:   3'- -CUAUGCGGCCgUCGCcaGCUCUCGGa -5'
12391 5' -59.4 NC_003324.1 + 53465 0.67 0.449835
Target:  5'- --aACGCCGGCAaguacacccgcGCGGaagcCGAG-GCCg -3'
miRNA:   3'- cuaUGCGGCCGU-----------CGCCa---GCUCuCGGa -5'
12391 5' -59.4 NC_003324.1 + 18020 0.67 0.453683
Target:  5'- cGAUugGCCGGCgccAcgggccaugcgauagGCGG-CGAGuGCCg -3'
miRNA:   3'- -CUAugCGGCCG---U---------------CGCCaGCUCuCGGa -5'
12391 5' -59.4 NC_003324.1 + 35322 0.66 0.489088
Target:  5'- -uUGCGCCGGCugcuGCGGUUGcuguuGCUg -3'
miRNA:   3'- cuAUGCGGCCGu---CGCCAGCucu--CGGa -5'
12391 5' -59.4 NC_003324.1 + 47910 0.66 0.489088
Target:  5'- cGAUG-GCCGGCuuauccGCugGGUCGAGAGUUUc -3'
miRNA:   3'- -CUAUgCGGCCGu-----CG--CCAGCUCUCGGA- -5'
12391 5' -59.4 NC_003324.1 + 4847 0.7 0.276506
Target:  5'- --gGCGCCGGCAacaacguuGCGGcCGGucGAGCCc -3'
miRNA:   3'- cuaUGCGGCCGU--------CGCCaGCU--CUCGGa -5'
12391 5' -59.4 NC_003324.1 + 45203 1.07 0.000525
Target:  5'- uGAUACGCCGGCAGCGGUCGAGAGCCUg -3'
miRNA:   3'- -CUAUGCGGCCGUCGCCAGCUCUCGGA- -5'
12391 5' -59.4 NC_003324.1 + 13167 0.77 0.088104
Target:  5'- -cUGCGUCGGCGGCGGUCGGcGGCg- -3'
miRNA:   3'- cuAUGCGGCCGUCGCCAGCUcUCGga -5'
12391 5' -59.4 NC_003324.1 + 54492 0.71 0.2566
Target:  5'- --gGC-CCGGCAGCGGUCccgGGGAGUUg -3'
miRNA:   3'- cuaUGcGGCCGUCGCCAG---CUCUCGGa -5'
12391 5' -59.4 NC_003324.1 + 32470 0.7 0.290451
Target:  5'- --cGCGCCGa-GGUGGUgCGAGAGCCc -3'
miRNA:   3'- cuaUGCGGCcgUCGCCA-GCUCUCGGa -5'
12391 5' -59.4 NC_003324.1 + 21383 0.68 0.368376
Target:  5'- gGAUAuCGCCGGCgaGGCGG-CGAacgcGGCCg -3'
miRNA:   3'- -CUAU-GCGGCCG--UCGCCaGCUc---UCGGa -5'
12391 5' -59.4 NC_003324.1 + 40326 0.67 0.421564
Target:  5'- --cACGCaaGGCGGCaGUCGAgcggGAGCCa -3'
miRNA:   3'- cuaUGCGg-CCGUCGcCAGCU----CUCGGa -5'
12391 5' -59.4 NC_003324.1 + 488 0.67 0.437455
Target:  5'- gGAUGCGCCagcccaauaggcauGGCuuGGCGGUgGuuAGCCg -3'
miRNA:   3'- -CUAUGCGG--------------CCG--UCGCCAgCucUCGGa -5'
12391 5' -59.4 NC_003324.1 + 31319 0.66 0.469252
Target:  5'- aGUGCgGCCGGCGGCGcuggcgcuggCGGGGGCa- -3'
miRNA:   3'- cUAUG-CGGCCGUCGCca--------GCUCUCGga -5'
12391 5' -59.4 NC_003324.1 + 20244 0.66 0.47912
Target:  5'- --gGCuGCCGGCAGCGuUCuGGaucGAGCCUc -3'
miRNA:   3'- cuaUG-CGGCCGUCGCcAG-CU---CUCGGA- -5'
12391 5' -59.4 NC_003324.1 + 14517 0.66 0.499153
Target:  5'- --gACGCCGGCAugGGcCcAGAGCCg -3'
miRNA:   3'- cuaUGCGGCCGUcgCCaGcUCUCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.