miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12392 5' -52.5 NC_003324.1 + 9214 0.66 0.887861
Target:  5'- cGCGGUGAugCugC-CGGUaaaCCCCGc -3'
miRNA:   3'- -CGUUACUugGugGcGCUAgaaGGGGC- -5'
12392 5' -52.5 NC_003324.1 + 8651 0.66 0.880318
Target:  5'- gGCAGUGAGCCAgCGCGcgaaaucgauGUCguagUCCa-- -3'
miRNA:   3'- -CGUUACUUGGUgGCGC----------UAGa---AGGggc -5'
12392 5' -52.5 NC_003324.1 + 25859 0.66 0.880318
Target:  5'- cGCGuggugGAGCgAUCGCGAUCgaCCuuGa -3'
miRNA:   3'- -CGUua---CUUGgUGGCGCUAGaaGGggC- -5'
12392 5' -52.5 NC_003324.1 + 31374 0.66 0.880318
Target:  5'- uGCAuUGAACUGCUuCGGgccgucCUUCCCCa -3'
miRNA:   3'- -CGUuACUUGGUGGcGCUa-----GAAGGGGc -5'
12392 5' -52.5 NC_003324.1 + 13319 0.66 0.864457
Target:  5'- gGCcAUGAugACCugCGCGAUCUgcauauUCgUCGa -3'
miRNA:   3'- -CGuUACU--UGGugGCGCUAGA------AGgGGC- -5'
12392 5' -52.5 NC_003324.1 + 6544 0.66 0.864457
Target:  5'- uGCAGUGuuGCCuuGCCGuCGAUUgUCCCgGc -3'
miRNA:   3'- -CGUUACu-UGG--UGGC-GCUAGaAGGGgC- -5'
12392 5' -52.5 NC_003324.1 + 49170 0.67 0.829841
Target:  5'- gGCAGcGAAauagaCGCCGCuuUCggCCCCGg -3'
miRNA:   3'- -CGUUaCUUg----GUGGCGcuAGaaGGGGC- -5'
12392 5' -52.5 NC_003324.1 + 4152 0.67 0.829841
Target:  5'- cCGAUGAACUugCGguCGAaauagcUCUUCCUCGu -3'
miRNA:   3'- cGUUACUUGGugGC--GCU------AGAAGGGGC- -5'
12392 5' -52.5 NC_003324.1 + 9015 0.67 0.820634
Target:  5'- aGCAagGAACCACCGCaaaggcGUUUgCCgCCGg -3'
miRNA:   3'- -CGUuaCUUGGUGGCGc-----UAGAaGG-GGC- -5'
12392 5' -52.5 NC_003324.1 + 42997 0.68 0.791843
Target:  5'- cGCAGUG-ACCGCCaaUGGUCg-CCCCGc -3'
miRNA:   3'- -CGUUACuUGGUGGc-GCUAGaaGGGGC- -5'
12392 5' -52.5 NC_003324.1 + 7352 0.68 0.791843
Target:  5'- uGUAGcGAGCgACCGUGAUCUcggucgaaguUUCCCa -3'
miRNA:   3'- -CGUUaCUUGgUGGCGCUAGA----------AGGGGc -5'
12392 5' -52.5 NC_003324.1 + 27730 0.68 0.771783
Target:  5'- gGCAccGAACCACuucggCGCGAagggcucugucgUCUUgCCCGa -3'
miRNA:   3'- -CGUuaCUUGGUG-----GCGCU------------AGAAgGGGC- -5'
12392 5' -52.5 NC_003324.1 + 1533 0.7 0.642367
Target:  5'- gGCAGUGGugCGCgGCGcuauggCCCCGa -3'
miRNA:   3'- -CGUUACUugGUGgCGCuagaa-GGGGC- -5'
12392 5' -52.5 NC_003324.1 + 6847 0.71 0.620146
Target:  5'- uCGAUGucCCAggaCGCGAUCUUCUCUGg -3'
miRNA:   3'- cGUUACuuGGUg--GCGCUAGAAGGGGC- -5'
12392 5' -52.5 NC_003324.1 + 30073 0.72 0.564945
Target:  5'- cGCGAcaccGGCCGCUGCGG-CUUCCUCGa -3'
miRNA:   3'- -CGUUac--UUGGUGGCGCUaGAAGGGGC- -5'
12392 5' -52.5 NC_003324.1 + 50165 0.76 0.365484
Target:  5'- gGCGAUcAACCACCGCGcuuUCUUCgCCa -3'
miRNA:   3'- -CGUUAcUUGGUGGCGCu--AGAAGgGGc -5'
12392 5' -52.5 NC_003324.1 + 39004 0.78 0.278407
Target:  5'- aGCgAGUGAGCCGgUGaCGAUCUUCUCCGc -3'
miRNA:   3'- -CG-UUACUUGGUgGC-GCUAGAAGGGGC- -5'
12392 5' -52.5 NC_003324.1 + 45311 1.11 0.00165
Target:  5'- cGCAAUGAACCACCGCGAUCUUCCCCGc -3'
miRNA:   3'- -CGUUACUUGGUGGCGCUAGAAGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.