Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 12393 | 3' | -55.7 | NC_003324.1 | + | 33423 | 0.66 | 0.700666 |
|
Target: 5'- cCCGAGCCgCUuCAUCggcGUUGUCCGu- -3' miRNA: 3'- -GGCUCGGgGAcGUAGa--UAACGGGUcc -5' |
|||||||
| 12393 | 3' | -55.7 | NC_003324.1 | + | 27083 | 0.66 | 0.700666 |
|
Target: 5'- gCCGgugcGGCuCCCUGCAUCUG--GCgCAGc -3' miRNA: 3'- -GGC----UCG-GGGACGUAGAUaaCGgGUCc -5' |
|||||||
| 12393 | 3' | -55.7 | NC_003324.1 | + | 23188 | 0.66 | 0.721946 |
|
Target: 5'- gCGAGCgcgguaccgCUCUGCAUCg--UGCgCCAGa -3' miRNA: 3'- gGCUCG---------GGGACGUAGauaACG-GGUCc -5' |
|||||||
| 12393 | 3' | -55.7 | NC_003324.1 | + | 49487 | 0.66 | 0.700666 |
|
Target: 5'- gCCGGGCUcgCCgaucGCgAUCgaguauUUGCCCGGGu -3' miRNA: 3'- -GGCUCGG--GGa---CG-UAGau----AACGGGUCC- -5' |
|||||||
| 12393 | 3' | -55.7 | NC_003324.1 | + | 34990 | 0.67 | 0.623588 |
|
Target: 5'- uCCGAGCCUgcagcguUUGCGUUUGcUGCCgCAGc -3' miRNA: 3'- -GGCUCGGG-------GACGUAGAUaACGG-GUCc -5' |
|||||||
| 12393 | 3' | -55.7 | NC_003324.1 | + | 19050 | 0.67 | 0.646506 |
|
Target: 5'- uUCGAGCCUUUGCAgcccauUUGCCCu-- -3' miRNA: 3'- -GGCUCGGGGACGUagau--AACGGGucc -5' |
|||||||
| 12393 | 3' | -55.7 | NC_003324.1 | + | 52277 | 0.67 | 0.646506 |
|
Target: 5'- cUCGAGCCCCU---UCUAccGCCCgauucGGGg -3' miRNA: 3'- -GGCUCGGGGAcguAGAUaaCGGG-----UCC- -5' |
|||||||
| 12393 | 3' | -55.7 | NC_003324.1 | + | 22911 | 0.68 | 0.613771 |
|
Target: 5'- cUCGAucucGUCUCUGCGUCg--UGCCaCGGGc -3' miRNA: 3'- -GGCU----CGGGGACGUAGauaACGG-GUCC- -5' |
|||||||
| 12393 | 3' | -55.7 | NC_003324.1 | + | 27820 | 0.72 | 0.381702 |
|
Target: 5'- gCCGAGCCCCUuccaGCcgCUgguguaGUUGUCgAGGu -3' miRNA: 3'- -GGCUCGGGGA----CGuaGA------UAACGGgUCC- -5' |
|||||||
| 12393 | 3' | -55.7 | NC_003324.1 | + | 45754 | 1.13 | 0.000522 |
|
Target: 5'- gCCGAGCCCCUGCAUCUAUUGCCCAGGg -3' miRNA: 3'- -GGCUCGGGGACGUAGAUAACGGGUCC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home