miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12393 5' -55.7 NC_003324.1 + 56066 0.73 0.347364
Target:  5'- cGGCUUCCAGGcUGGCGAACCCg---- -3'
miRNA:   3'- -CCGGAGGUUCuGCUGCUUGGGgacac -5'
12393 5' -55.7 NC_003324.1 + 53491 0.66 0.709787
Target:  5'- aGCCgaggCCGAauGcCGGCGAugCCCUGaUGa -3'
miRNA:   3'- cCGGa---GGUU--CuGCUGCUugGGGAC-AC- -5'
12393 5' -55.7 NC_003324.1 + 25247 0.67 0.645142
Target:  5'- uGGCCgcccuuaaagCCAAGGCGACGGGCgauguCCCa--- -3'
miRNA:   3'- -CCGGa---------GGUUCUGCUGCUUG-----GGGacac -5'
12393 5' -55.7 NC_003324.1 + 22104 0.68 0.601672
Target:  5'- cGGCgCgCCA-GACGAuCGAG-CCCUGUGg -3'
miRNA:   3'- -CCG-GaGGUuCUGCU-GCUUgGGGACAC- -5'
12393 5' -55.7 NC_003324.1 + 5884 0.7 0.495844
Target:  5'- cGGCCUUgGGGAUGACGGccuGCgCCUUGaUGg -3'
miRNA:   3'- -CCGGAGgUUCUGCUGCU---UG-GGGAC-AC- -5'
12393 5' -55.7 NC_003324.1 + 14455 0.71 0.44609
Target:  5'- cGGCgUCCAAGcauCGGCGGACCUugCUGg- -3'
miRNA:   3'- -CCGgAGGUUCu--GCUGCUUGGG--GACac -5'
12393 5' -55.7 NC_003324.1 + 17240 0.71 0.402876
Target:  5'- aGGUCUCCGAGAUacgcgcaggcgugaaGcCGAGCgCCUGUGc -3'
miRNA:   3'- -CCGGAGGUUCUG---------------CuGCUUGgGGACAC- -5'
12393 5' -55.7 NC_003324.1 + 38445 0.66 0.741249
Target:  5'- -uCCUCCcgcacGACGGCGAccagcgccGCCCCgGUGc -3'
miRNA:   3'- ccGGAGGuu---CUGCUGCU--------UGGGGaCAC- -5'
12393 5' -55.7 NC_003324.1 + 32180 0.67 0.634268
Target:  5'- cGGCCUCaccGGCGACGAGCCg----- -3'
miRNA:   3'- -CCGGAGguuCUGCUGCUUGGggacac -5'
12393 5' -55.7 NC_003324.1 + 49004 0.69 0.558602
Target:  5'- cGGCCUugaCCAGGuCGACGA--UCUUGUGg -3'
miRNA:   3'- -CCGGA---GGUUCuGCUGCUugGGGACAC- -5'
12393 5' -55.7 NC_003324.1 + 20414 0.71 0.44609
Target:  5'- cGGCUUCUGucggcGAUGGCGAACCCCg--- -3'
miRNA:   3'- -CCGGAGGUu----CUGCUGCUUGGGGacac -5'
12393 5' -55.7 NC_003324.1 + 45714 1.1 0.00091
Target:  5'- cGGCCUCCAAGACGACGAACCCCUGUGc -3'
miRNA:   3'- -CCGGAGGUUCUGCUGCUUGGGGACAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.