miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12395 3' -52.1 NC_003324.1 + 28531 0.66 0.892619
Target:  5'- cCGAGacCACUG-AGGcCUGCCGCGcucaacauGGCg -3'
miRNA:   3'- cGCUU--GUGACgUCCuGAUGGCGU--------UCG- -5'
12395 3' -52.1 NC_003324.1 + 48256 0.66 0.892619
Target:  5'- aGCGAACGCgGCcgauaGGGACcacgucGCUGCAAugucGCa -3'
miRNA:   3'- -CGCUUGUGaCG-----UCCUGa-----UGGCGUU----CG- -5'
12395 3' -52.1 NC_003324.1 + 57341 0.66 0.877443
Target:  5'- cUGAGCGCaauaGCAGG-CUgGCCGCuuGCg -3'
miRNA:   3'- cGCUUGUGa---CGUCCuGA-UGGCGuuCG- -5'
12395 3' -52.1 NC_003324.1 + 36421 0.66 0.877443
Target:  5'- cGCGGAUGUUGC-GGAUcaUGCCGUAGGg -3'
miRNA:   3'- -CGCUUGUGACGuCCUG--AUGGCGUUCg -5'
12395 3' -52.1 NC_003324.1 + 13427 0.66 0.869456
Target:  5'- cGCGucGCAUguuugguccgGCGcGGCUGCCGuCGAGCa -3'
miRNA:   3'- -CGCu-UGUGa---------CGUcCUGAUGGC-GUUCG- -5'
12395 3' -52.1 NC_003324.1 + 50439 0.66 0.869456
Target:  5'- gGCGugguGCAgCUcGCAGGGCUGCgCGauccggaGGGCg -3'
miRNA:   3'- -CGCu---UGU-GA-CGUCCUGAUG-GCg------UUCG- -5'
12395 3' -52.1 NC_003324.1 + 31180 0.66 0.861213
Target:  5'- cCGAGCA--GCAGcGcAUUGCCGCAAGg -3'
miRNA:   3'- cGCUUGUgaCGUC-C-UGAUGGCGUUCg -5'
12395 3' -52.1 NC_003324.1 + 50729 0.66 0.861213
Target:  5'- uGCGAAgAUUGCucacCUACCguGCAGGCa -3'
miRNA:   3'- -CGCUUgUGACGuccuGAUGG--CGUUCG- -5'
12395 3' -52.1 NC_003324.1 + 6522 0.66 0.861213
Target:  5'- cGCuGAGcCACgGCAGGGu--CUGCGAGCu -3'
miRNA:   3'- -CG-CUU-GUGaCGUCCUgauGGCGUUCG- -5'
12395 3' -52.1 NC_003324.1 + 19190 0.66 0.861213
Target:  5'- uCGAcaaGCGCaaUGCcgaagAGGA-UGCCGCGAGCg -3'
miRNA:   3'- cGCU---UGUG--ACG-----UCCUgAUGGCGUUCG- -5'
12395 3' -52.1 NC_003324.1 + 3879 0.66 0.861213
Target:  5'- aGCGuaaucccCGCUGaauGGCUACCGCcAGCg -3'
miRNA:   3'- -CGCuu-----GUGACgucCUGAUGGCGuUCG- -5'
12395 3' -52.1 NC_003324.1 + 4378 0.66 0.861213
Target:  5'- cGCGGuGCGCuUGCGGGACaucuUGCCaCcGGCg -3'
miRNA:   3'- -CGCU-UGUG-ACGUCCUG----AUGGcGuUCG- -5'
12395 3' -52.1 NC_003324.1 + 42651 0.66 0.860375
Target:  5'- aGCGAG-GCUGCcGGcacggucAUUGCgGCAAGCa -3'
miRNA:   3'- -CGCUUgUGACGuCC-------UGAUGgCGUUCG- -5'
12395 3' -52.1 NC_003324.1 + 43205 0.66 0.859534
Target:  5'- -aGGACGgcaacCUGCGGGACUuuggcauuaugcCCGCuGGCg -3'
miRNA:   3'- cgCUUGU-----GACGUCCUGAu-----------GGCGuUCG- -5'
12395 3' -52.1 NC_003324.1 + 25975 0.66 0.85272
Target:  5'- uGCaGGAC-CUGCAGGGCUuucuugaaaGCCuCAAGg -3'
miRNA:   3'- -CG-CUUGuGACGUCCUGA---------UGGcGUUCg -5'
12395 3' -52.1 NC_003324.1 + 23896 0.66 0.85272
Target:  5'- aCGAuCGCguccGCAGGuuUGCCGUAgAGCg -3'
miRNA:   3'- cGCUuGUGa---CGUCCugAUGGCGU-UCG- -5'
12395 3' -52.1 NC_003324.1 + 5985 0.66 0.85272
Target:  5'- cGCGAGCACggUGgAGGAgauCgaaGCCGCAAuuGCc -3'
miRNA:   3'- -CGCUUGUG--ACgUCCU---Ga--UGGCGUU--CG- -5'
12395 3' -52.1 NC_003324.1 + 14506 0.67 0.843987
Target:  5'- aGCcAACACUgcgcgGCAGGGCguCCGCGacaaGGCg -3'
miRNA:   3'- -CGcUUGUGA-----CGUCCUGauGGCGU----UCG- -5'
12395 3' -52.1 NC_003324.1 + 40128 0.67 0.843987
Target:  5'- cGCGcAACuAC-GguGGACgGCCGaCGAGCu -3'
miRNA:   3'- -CGC-UUG-UGaCguCCUGaUGGC-GUUCG- -5'
12395 3' -52.1 NC_003324.1 + 27186 0.67 0.838635
Target:  5'- aGCGAccgcgcuggugugcuGCGCcagaUGCAGGGa-GCCGCAccGGCc -3'
miRNA:   3'- -CGCU---------------UGUG----ACGUCCUgaUGGCGU--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.