miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12396 5' -47.1 NC_003324.1 + 4926 0.66 0.994737
Target:  5'- gCGGCUuccgcuacaccUGgacCGAAGAG--ACGAAGGa -3'
miRNA:   3'- gGCCGA-----------ACa--GCUUCUUuaUGCUUCCc -5'
12396 5' -47.1 NC_003324.1 + 55564 0.66 0.993821
Target:  5'- cCCGGC--GUgGAAGAA--AUGGAGGa -3'
miRNA:   3'- -GGCCGaaCAgCUUCUUuaUGCUUCCc -5'
12396 5' -47.1 NC_003324.1 + 37157 0.66 0.993624
Target:  5'- gCCGGCUUGUCGucuuccuUGCGccGcGGc -3'
miRNA:   3'- -GGCCGAACAGCuucuuu-AUGCuuC-CC- -5'
12396 5' -47.1 NC_003324.1 + 21917 0.67 0.988811
Target:  5'- cCCGGCUgcgCGAAcuGAUGCaGAAGGcGg -3'
miRNA:   3'- -GGCCGAacaGCUUcuUUAUG-CUUCC-C- -5'
12396 5' -47.1 NC_003324.1 + 10207 0.67 0.988811
Target:  5'- uCCGGC--GUCGgcGggGUGuaGGGGGa -3'
miRNA:   3'- -GGCCGaaCAGCuuCuuUAUgcUUCCC- -5'
12396 5' -47.1 NC_003324.1 + 48308 0.67 0.987165
Target:  5'- gCGGCau-UCGcAAGAAGcugcGCGAGGGGg -3'
miRNA:   3'- gGCCGaacAGC-UUCUUUa---UGCUUCCC- -5'
12396 5' -47.1 NC_003324.1 + 7841 0.68 0.978659
Target:  5'- uCUGGCUUG-CGcAGAAugGCGggGcGGc -3'
miRNA:   3'- -GGCCGAACaGCuUCUUuaUGCuuC-CC- -5'
12396 5' -47.1 NC_003324.1 + 20416 0.68 0.978659
Target:  5'- aCCGGCUucUGUCGgcGAug-GCGAAc-- -3'
miRNA:   3'- -GGCCGA--ACAGCuuCUuuaUGCUUccc -5'
12396 5' -47.1 NC_003324.1 + 11590 0.68 0.975997
Target:  5'- gCGGCUccUGcCGGAGAcuGGUGCGAcGGc -3'
miRNA:   3'- gGCCGA--ACaGCUUCU--UUAUGCUuCCc -5'
12396 5' -47.1 NC_003324.1 + 35442 0.68 0.975718
Target:  5'- cCCGGCUUcgugcaggaucacGUCGgcGAugucgGCGAgcguGGGGa -3'
miRNA:   3'- -GGCCGAA-------------CAGCuuCUuua--UGCU----UCCC- -5'
12396 5' -47.1 NC_003324.1 + 48369 0.69 0.973099
Target:  5'- gCCGcGCUUGUCGAucugcUGC-AGGGGg -3'
miRNA:   3'- -GGC-CGAACAGCUucuuuAUGcUUCCC- -5'
12396 5' -47.1 NC_003324.1 + 32588 0.69 0.966561
Target:  5'- aCCGGaCUUGgCGuugcuGGAAAgguUGAGGGGg -3'
miRNA:   3'- -GGCC-GAACaGCu----UCUUUau-GCUUCCC- -5'
12396 5' -47.1 NC_003324.1 + 16086 0.7 0.954768
Target:  5'- aCGGCUgaucagCGAAGAGAUcggacugcaGCGAGGuGGu -3'
miRNA:   3'- gGCCGAaca---GCUUCUUUA---------UGCUUC-CC- -5'
12396 5' -47.1 NC_003324.1 + 8734 0.71 0.923463
Target:  5'- gCGGCggUGUCGGAGAAgucgGUGCGAucGa -3'
miRNA:   3'- gGCCGa-ACAGCUUCUU----UAUGCUucCc -5'
12396 5' -47.1 NC_003324.1 + 31720 0.72 0.889264
Target:  5'- uCCGGCgcGcCGAAGGAAgugcGCGAGuGGGu -3'
miRNA:   3'- -GGCCGaaCaGCUUCUUUa---UGCUU-CCC- -5'
12396 5' -47.1 NC_003324.1 + 7397 0.73 0.865337
Target:  5'- cCCGGCUuccUGcUCGAccaauggggcacGGAGAUugGcAAGGGu -3'
miRNA:   3'- -GGCCGA---AC-AGCU------------UCUUUAugC-UUCCC- -5'
12396 5' -47.1 NC_003324.1 + 24654 0.74 0.810687
Target:  5'- uCgGGCUUGUCGAuGAAGUAuugguUGAGcGGGa -3'
miRNA:   3'- -GgCCGAACAGCUuCUUUAU-----GCUU-CCC- -5'
12396 5' -47.1 NC_003324.1 + 31062 0.75 0.737992
Target:  5'- gCCGGCgUGgcaGAAGAAGUGgGAAGaGGa -3'
miRNA:   3'- -GGCCGaACag-CUUCUUUAUgCUUC-CC- -5'
12396 5' -47.1 NC_003324.1 + 48867 1.15 0.003911
Target:  5'- uCCGGCUUGUCGAAGAAAUACGAAGGGg -3'
miRNA:   3'- -GGCCGAACAGCUUCUUUAUGCUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.