miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12397 3' -50.6 NC_003324.1 + 52434 0.66 0.929324
Target:  5'- uGCAgGCGAGA-AGAgUGCUGCgugcaaUUCGGUg -3'
miRNA:   3'- -CGU-CGCUUUaUCU-GCGGCGa-----AAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 17364 0.66 0.929324
Target:  5'- uGCAGUGAGcgugcaugacGUGGuCGCacagGCgcUCGGCu -3'
miRNA:   3'- -CGUCGCUU----------UAUCuGCGg---CGaaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 7747 0.66 0.929324
Target:  5'- uGCAGCGAcacAUAaACGCCaGC---CGGCa -3'
miRNA:   3'- -CGUCGCUu--UAUcUGCGG-CGaaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 54001 0.66 0.929898
Target:  5'- gGCGGCGAAGcgcacuUGCCGCgcugaugaucuugCGGCg -3'
miRNA:   3'- -CGUCGCUUUaucu--GCGGCGaaa----------GCCG- -5'
12397 3' -50.6 NC_003324.1 + 30126 0.66 0.934934
Target:  5'- gGCGGCGuGAUGGGCGgCgGCaugggUGGUg -3'
miRNA:   3'- -CGUCGCuUUAUCUGC-GgCGaaa--GCCG- -5'
12397 3' -50.6 NC_003324.1 + 33842 0.66 0.934934
Target:  5'- cGCGGUGAcugggAGACG-UGCUgugaCGGCg -3'
miRNA:   3'- -CGUCGCUuua--UCUGCgGCGAaa--GCCG- -5'
12397 3' -50.6 NC_003324.1 + 30633 0.66 0.940253
Target:  5'- cGCcGCuGGAGUAGagcagcGCGUCGCag-CGGCa -3'
miRNA:   3'- -CGuCG-CUUUAUC------UGCGGCGaaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 5177 0.66 0.940253
Target:  5'- aGCGGCGcAGAUcGucgaucGCGCCGCUUaagcuaUCaGGCc -3'
miRNA:   3'- -CGUCGC-UUUAuC------UGCGGCGAA------AG-CCG- -5'
12397 3' -50.6 NC_003324.1 + 21311 0.66 0.944794
Target:  5'- ----aGAGAUGGAaacgcgcCGUCGCcUUCGGCa -3'
miRNA:   3'- cgucgCUUUAUCU-------GCGGCGaAAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 6675 0.66 0.945284
Target:  5'- aCGGCacauaGGACGCUGUgugccagUUCGGCu -3'
miRNA:   3'- cGUCGcuuuaUCUGCGGCGa------AAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 48553 0.66 0.945284
Target:  5'- cGCAGCGcuc--GAUGuCUGCUUUgaUGGCg -3'
miRNA:   3'- -CGUCGCuuuauCUGC-GGCGAAA--GCCG- -5'
12397 3' -50.6 NC_003324.1 + 45843 0.66 0.945284
Target:  5'- aCAGUGAGGUGGAaaCGgCGCgg--GGCg -3'
miRNA:   3'- cGUCGCUUUAUCU--GCgGCGaaagCCG- -5'
12397 3' -50.6 NC_003324.1 + 28976 0.67 0.889574
Target:  5'- cGCAGCGAAGgacGAgGCCgGCcagUGGUg -3'
miRNA:   3'- -CGUCGCUUUau-CUgCGG-CGaaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 33408 0.67 0.910744
Target:  5'- cGCuuGCGAu---GAacgcccgaGCCGCUUcaUCGGCg -3'
miRNA:   3'- -CGu-CGCUuuauCUg-------CGGCGAA--AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 52152 0.67 0.896913
Target:  5'- aCAGCGA----GAUGCCGUUUUUuGCg -3'
miRNA:   3'- cGUCGCUuuauCUGCGGCGAAAGcCG- -5'
12397 3' -50.6 NC_003324.1 + 49784 0.67 0.903971
Target:  5'- gGCAGCGGGAUAagUGCCGU---CGGg -3'
miRNA:   3'- -CGUCGCUUUAUcuGCGGCGaaaGCCg -5'
12397 3' -50.6 NC_003324.1 + 53385 0.67 0.888072
Target:  5'- aCGGCGAccGAUAGuucuuucucaaGCCGCgacCGGCg -3'
miRNA:   3'- cGUCGCU--UUAUCug---------CGGCGaaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 33286 0.67 0.881957
Target:  5'- aCAGCGAcaaGGACGCCuucuacaagGCUUUCGa- -3'
miRNA:   3'- cGUCGCUuuaUCUGCGG---------CGAAAGCcg -5'
12397 3' -50.6 NC_003324.1 + 19374 0.67 0.910744
Target:  5'- uCAGCGAugGAUcGACGCCgGCgcgcgUCGcGCc -3'
miRNA:   3'- cGUCGCU--UUAuCUGCGG-CGaa---AGC-CG- -5'
12397 3' -50.6 NC_003324.1 + 21164 0.67 0.903971
Target:  5'- cGCAGCac-----GCGCCGCgg-CGGCc -3'
miRNA:   3'- -CGUCGcuuuaucUGCGGCGaaaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.