miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12397 5' -62.1 NC_003324.1 + 44131 0.66 0.392387
Target:  5'- aAGCCGGuccccuUUGCCUCGCCGUa- -3'
miRNA:   3'- cUCGGCCuaccu-AACGGGGCGGCGgc -5'
12397 5' -62.1 NC_003324.1 + 14704 0.66 0.350684
Target:  5'- -uGCCGGAaagGGccGUaGCUCCgGCCGCCa -3'
miRNA:   3'- cuCGGCCUa--CC--UAaCGGGG-CGGCGGc -5'
12397 5' -62.1 NC_003324.1 + 16807 0.66 0.392387
Target:  5'- -cGCCGGGcaGAUUGCCCagCGCUGCa- -3'
miRNA:   3'- cuCGGCCUacCUAACGGG--GCGGCGgc -5'
12397 5' -62.1 NC_003324.1 + 36774 0.66 0.392387
Target:  5'- uGGCCGGuguuuucgagcuccGGcucauccAUUGCCUCGUCGCCGu -3'
miRNA:   3'- cUCGGCCua------------CC-------UAACGGGGCGGCGGC- -5'
12397 5' -62.1 NC_003324.1 + 21255 0.66 0.366981
Target:  5'- --uCCaGGAUgagcGGAUUGCCCgaCGCUGCCGc -3'
miRNA:   3'- cucGG-CCUA----CCUAACGGG--GCGGCGGC- -5'
12397 5' -62.1 NC_003324.1 + 30362 0.67 0.341942
Target:  5'- aGAGCCuuGAUGGcgUcGCCCUcggccauGCCGCCc -3'
miRNA:   3'- -CUCGGc-CUACCuaA-CGGGG-------CGGCGGc -5'
12397 5' -62.1 NC_003324.1 + 1126 0.67 0.334908
Target:  5'- -uGCCGGuagacaGGAcgaacagaUUGagCCCGCCGCCGu -3'
miRNA:   3'- cuCGGCCua----CCU--------AACg-GGGCGGCGGC- -5'
12397 5' -62.1 NC_003324.1 + 53889 0.68 0.283831
Target:  5'- gGGGCCuGGUGc---GCCCCGCCGCa- -3'
miRNA:   3'- -CUCGGcCUACcuaaCGGGGCGGCGgc -5'
12397 5' -62.1 NC_003324.1 + 18375 0.69 0.23323
Target:  5'- aGGCCGGGgcaGcGAUUGCCCgCGCgucgGCCGa -3'
miRNA:   3'- cUCGGCCUa--C-CUAACGGG-GCGg---CGGC- -5'
12397 5' -62.1 NC_003324.1 + 28076 0.69 0.239115
Target:  5'- -uGCCGGAUGGGcucgUGCCUUugcgcucggaGCCaGCCGg -3'
miRNA:   3'- cuCGGCCUACCUa---ACGGGG----------CGG-CGGC- -5'
12397 5' -62.1 NC_003324.1 + 35312 0.69 0.23323
Target:  5'- -cGCCGGc-GGAUUGCgCCgGCUGCUGc -3'
miRNA:   3'- cuCGGCCuaCCUAACG-GGgCGGCGGC- -5'
12397 5' -62.1 NC_003324.1 + 55176 0.72 0.158805
Target:  5'- aGGCCGGAUGGGcucucGCCCaCGCCauGUCGa -3'
miRNA:   3'- cUCGGCCUACCUaa---CGGG-GCGG--CGGC- -5'
12397 5' -62.1 NC_003324.1 + 43003 0.75 0.094781
Target:  5'- -cGCCGGcgcagugaccgccaAUGGuc-GCCCCGCCGCUGg -3'
miRNA:   3'- cuCGGCC--------------UACCuaaCGGGGCGGCGGC- -5'
12397 5' -62.1 NC_003324.1 + 49135 1.07 0.00032
Target:  5'- aGAGCCGGAUGGAUUGCCCCGCCGCCGc -3'
miRNA:   3'- -CUCGGCCUACCUAACGGGGCGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.