Results 1 - 20 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12398 | 3' | -61 | NC_003324.1 | + | 12037 | 0.66 | 0.456495 |
Target: 5'- uGCuUGCCGGGCagggCGCCGAcucuucUC-CGAa- -3' miRNA: 3'- gCG-ACGGCCCGa---GCGGCU------AGcGCUag -5' |
|||||||
12398 | 3' | -61 | NC_003324.1 | + | 21851 | 0.66 | 0.456495 |
Target: 5'- gCGCaGCCGGGCcuccUCGgCGGccuuggccuucuUCGgGGUCg -3' miRNA: 3'- -GCGaCGGCCCG----AGCgGCU------------AGCgCUAG- -5' |
|||||||
12398 | 3' | -61 | NC_003324.1 | + | 25968 | 0.66 | 0.453647 |
Target: 5'- -cCUGCaGGGCuuUCuugaaagccucaagGUCGAUCGCGAUCg -3' miRNA: 3'- gcGACGgCCCG--AG--------------CGGCUAGCGCUAG- -5' |
|||||||
12398 | 3' | -61 | NC_003324.1 | + | 14516 | 0.66 | 0.437694 |
Target: 5'- aCGCcgGCaUGGGCccagaGCCGggCGUGAUCc -3' miRNA: 3'- -GCGa-CG-GCCCGag---CGGCuaGCGCUAG- -5' |
|||||||
12398 | 3' | -61 | NC_003324.1 | + | 30048 | 0.66 | 0.437694 |
Target: 5'- uGCcGCCGcccaucacGC-CGCCGGUCGCGAc- -3' miRNA: 3'- gCGaCGGCc-------CGaGCGGCUAGCGCUag -5' |
|||||||
12398 | 3' | -61 | NC_003324.1 | + | 28636 | 0.66 | 0.437694 |
Target: 5'- uCGUUG-CGGGC-CGCCuuGUCGCGcGUCg -3' miRNA: 3'- -GCGACgGCCCGaGCGGc-UAGCGC-UAG- -5' |
|||||||
12398 | 3' | -61 | NC_003324.1 | + | 42974 | 0.66 | 0.428461 |
Target: 5'- cCGCcGCUGGG-UCGUucuCGGUCGCaGAUCc -3' miRNA: 3'- -GCGaCGGCCCgAGCG---GCUAGCG-CUAG- -5' |
|||||||
12398 | 3' | -61 | NC_003324.1 | + | 43794 | 0.66 | 0.419344 |
Target: 5'- gGgUGCCGGGaaCGCCGGcaaggCGCGugaaAUCa -3' miRNA: 3'- gCgACGGCCCgaGCGGCUa----GCGC----UAG- -5' |
|||||||
12398 | 3' | -61 | NC_003324.1 | + | 22459 | 0.66 | 0.410346 |
Target: 5'- aCGCaGCaUGGGCUCGUCGAgguagCGCa--- -3' miRNA: 3'- -GCGaCG-GCCCGAGCGGCUa----GCGcuag -5' |
|||||||
12398 | 3' | -61 | NC_003324.1 | + | 55321 | 0.67 | 0.400588 |
Target: 5'- aGCUGCCacagcGGCucaaggaUCGCUGGaaCGCGAUCa -3' miRNA: 3'- gCGACGGc----CCG-------AGCGGCUa-GCGCUAG- -5' |
|||||||
12398 | 3' | -61 | NC_003324.1 | + | 26877 | 0.67 | 0.384086 |
Target: 5'- gGCUcaagggugacGCCGGGCUC-CauGUCGCGAUg -3' miRNA: 3'- gCGA----------CGGCCCGAGcGgcUAGCGCUAg -5' |
|||||||
12398 | 3' | -61 | NC_003324.1 | + | 50096 | 0.67 | 0.384086 |
Target: 5'- aGCgGCCccaGcGCUUGCCGAUCuugugggcgGCGAUCa -3' miRNA: 3'- gCGaCGGc--C-CGAGCGGCUAG---------CGCUAG- -5' |
|||||||
12398 | 3' | -61 | NC_003324.1 | + | 14539 | 0.67 | 0.36721 |
Target: 5'- gGC-GCUGGcGCUCaagGCCGA-CGUGGUCa -3' miRNA: 3'- gCGaCGGCC-CGAG---CGGCUaGCGCUAG- -5' |
|||||||
12398 | 3' | -61 | NC_003324.1 | + | 49106 | 0.67 | 0.358965 |
Target: 5'- uCGCUGCCGGuGacgcgaUCGCCaaGAUgGCGGg- -3' miRNA: 3'- -GCGACGGCC-Cg-----AGCGG--CUAgCGCUag -5' |
|||||||
12398 | 3' | -61 | NC_003324.1 | + | 6594 | 0.67 | 0.358148 |
Target: 5'- -cCUGCCGuGGCUCagcgGCCGAgacgagaUUGCGGUUa -3' miRNA: 3'- gcGACGGC-CCGAG----CGGCU-------AGCGCUAG- -5' |
|||||||
12398 | 3' | -61 | NC_003324.1 | + | 8121 | 0.68 | 0.35085 |
Target: 5'- uGCUgaaacucacccGCCGGGCagcugcgCGCuCGAcUGCGAUCa -3' miRNA: 3'- gCGA-----------CGGCCCGa------GCG-GCUaGCGCUAG- -5' |
|||||||
12398 | 3' | -61 | NC_003324.1 | + | 49390 | 0.68 | 0.342867 |
Target: 5'- aGCgacCCGGGCaaauacUCGAUCGCGAUCg -3' miRNA: 3'- gCGac-GGCCCGagc---GGCUAGCGCUAG- -5' |
|||||||
12398 | 3' | -61 | NC_003324.1 | + | 1405 | 0.68 | 0.327296 |
Target: 5'- aCGgUGCUGGGCguucuucgccUCGUCGAgcagCGCGAc- -3' miRNA: 3'- -GCgACGGCCCG----------AGCGGCUa---GCGCUag -5' |
|||||||
12398 | 3' | -61 | NC_003324.1 | + | 35539 | 0.68 | 0.319709 |
Target: 5'- aCGCUcGCCGacaUCGCCGA-CGUGAUCc -3' miRNA: 3'- -GCGA-CGGCccgAGCGGCUaGCGCUAG- -5' |
|||||||
12398 | 3' | -61 | NC_003324.1 | + | 19007 | 0.68 | 0.319709 |
Target: 5'- gGCUGCaCGcGGCUgGCCucGAaCGCGAUg -3' miRNA: 3'- gCGACG-GC-CCGAgCGG--CUaGCGCUAg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home