miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
124 5' -62.7 AC_000006.1 + 10841 0.66 0.277658
Target:  5'- gCAG-CGGGGAggAGCCCgaggagaUGCGCGacuGCc -3'
miRNA:   3'- -GUCuGCCCCUagUCGGG-------GCGCGCg--CG- -5'
124 5' -62.7 AC_000006.1 + 5198 0.66 0.239351
Target:  5'- --aACGGGcacGGUCuucGCCCUGCGCGUcgGCg -3'
miRNA:   3'- gucUGCCC---CUAGu--CGGGGCGCGCG--CG- -5'
124 5' -62.7 AC_000006.1 + 15541 0.67 0.233313
Target:  5'- --uGCGGGGGgugcaguggCGGCgCgGCGCGCGg -3'
miRNA:   3'- gucUGCCCCUa--------GUCGgGgCGCGCGCg -5'
124 5' -62.7 AC_000006.1 + 16692 0.67 0.233313
Target:  5'- aCGGugGGcagaacGAgcgagCGGCCCCG-GCGCGUu -3'
miRNA:   3'- -GUCugCCc-----CUa----GUCGGGGCgCGCGCG- -5'
124 5' -62.7 AC_000006.1 + 12751 0.67 0.221623
Target:  5'- aGGAgGGGGccacuccCAGCgCCGCGCuggacaugaccGCGCg -3'
miRNA:   3'- gUCUgCCCCua-----GUCGgGGCGCG-----------CGCG- -5'
124 5' -62.7 AC_000006.1 + 21470 0.68 0.199736
Target:  5'- gCAGuuGGGaccgguGCUCUGCGCGCGCg -3'
miRNA:   3'- -GUCugCCCcuagu-CGGGGCGCGCGCG- -5'
124 5' -62.7 AC_000006.1 + 10577 0.68 0.175046
Target:  5'- -cGGCGGGGugaccaAGUCCCGCuCGcCGCg -3'
miRNA:   3'- guCUGCCCCuag---UCGGGGCGcGC-GCG- -5'
124 5' -62.7 AC_000006.1 + 8335 0.69 0.157288
Target:  5'- gCAG-CGGcGGuucCGGCCCCGCGgGCa- -3'
miRNA:   3'- -GUCuGCC-CCua-GUCGGGGCGCgCGcg -5'
124 5' -62.7 AC_000006.1 + 8726 0.7 0.126586
Target:  5'- cCAGACGcGGcuguaGAccacguccccgUCGGCgUCGCGCGCGCg -3'
miRNA:   3'- -GUCUGC-CC-----CU-----------AGUCGgGGCGCGCGCG- -5'
124 5' -62.7 AC_000006.1 + 21683 0.72 0.101514
Target:  5'- gCAGugcACGGGcAUCAGCaucaucCCCGCGCcGCGCu -3'
miRNA:   3'- -GUC---UGCCCcUAGUCG------GGGCGCG-CGCG- -5'
124 5' -62.7 AC_000006.1 + 10956 1.04 0.000255
Target:  5'- gCAGACGGGGAUCAGCCCCGCGCcGCGCa -3'
miRNA:   3'- -GUCUGCCCCUAGUCGGGGCGCG-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.