miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12400 5' -58.6 NC_003324.1 + 2362 0.66 0.560377
Target:  5'- -cCGCCcgcagGGGCggGUCGCGGUCgcugCGGGAg -3'
miRNA:   3'- aaGUGG-----CUUGuaCAGCGCCGG----GCCCU- -5'
12400 5' -58.6 NC_003324.1 + 48684 0.66 0.560377
Target:  5'- -gCGCCGAccuGCGUGUCGauuggguuCGGCUucuuCGGGGa -3'
miRNA:   3'- aaGUGGCU---UGUACAGC--------GCCGG----GCCCU- -5'
12400 5' -58.6 NC_003324.1 + 33499 0.66 0.528879
Target:  5'- -aCGCCGAugAa---GCGGCUCGGGc -3'
miRNA:   3'- aaGUGGCUugUacagCGCCGGGCCCu -5'
12400 5' -58.6 NC_003324.1 + 17632 0.66 0.518522
Target:  5'- -cCGCCGAGC---UCG-GGCCCGaGGAu -3'
miRNA:   3'- aaGUGGCUUGuacAGCgCCGGGC-CCU- -5'
12400 5' -58.6 NC_003324.1 + 30327 0.66 0.518522
Target:  5'- aUCGCCGAugGUGUCGgCGGUggcgucgcUCGGc- -3'
miRNA:   3'- aAGUGGCUugUACAGC-GCCG--------GGCCcu -5'
12400 5' -58.6 NC_003324.1 + 4585 0.67 0.498058
Target:  5'- --gGCCc-GCAUGaUGuCGGCCCGGGAu -3'
miRNA:   3'- aagUGGcuUGUACaGC-GCCGGGCCCU- -5'
12400 5' -58.6 NC_003324.1 + 12112 0.67 0.487961
Target:  5'- aUCGCgGAGCg---CGCGGCcucggCCGGGAa -3'
miRNA:   3'- aAGUGgCUUGuacaGCGCCG-----GGCCCU- -5'
12400 5' -58.6 NC_003324.1 + 47166 0.67 0.468066
Target:  5'- cUCGCCGcACGUGUCGgGGUCUacuuGGcGAu -3'
miRNA:   3'- aAGUGGCuUGUACAGCgCCGGG----CC-CU- -5'
12400 5' -58.6 NC_003324.1 + 44656 0.69 0.375515
Target:  5'- cUCGCCGc-CGUGUCGCuGCCgaaCGGGGu -3'
miRNA:   3'- aAGUGGCuuGUACAGCGcCGG---GCCCU- -5'
12400 5' -58.6 NC_003324.1 + 48716 0.69 0.342117
Target:  5'- --uGCCGAugAUGUUGCGGCggagCCGGa- -3'
miRNA:   3'- aagUGGCUugUACAGCGCCG----GGCCcu -5'
12400 5' -58.6 NC_003324.1 + 36028 0.71 0.281927
Target:  5'- -aCACCGGAgUAUGUCGCGGUCaacgaCGGGc -3'
miRNA:   3'- aaGUGGCUU-GUACAGCGCCGG-----GCCCu -5'
12400 5' -58.6 NC_003324.1 + 18154 0.72 0.255123
Target:  5'- uUUCGCCGAcaccgGCAagGUCGUGGCuCUGGGu -3'
miRNA:   3'- -AAGUGGCU-----UGUa-CAGCGCCG-GGCCCu -5'
12400 5' -58.6 NC_003324.1 + 50477 1.06 0.000812
Target:  5'- gUUCACCGAACAUGUCGCGGCCCGGGAc -3'
miRNA:   3'- -AAGUGGCUUGUACAGCGCCGGGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.