miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12401 3' -58.4 NC_003324.1 + 25485 0.66 0.561254
Target:  5'- cUACCCGAGgaCGGUagCGUCGCgaagGGCUGGg -3'
miRNA:   3'- -GUGGGUUUagGCCA--GCGGCG----CCGACU- -5'
12401 3' -58.4 NC_003324.1 + 28145 0.66 0.529871
Target:  5'- aGCCCA--UCCGGcaaGCCGUGGUccgucaagaUGAa -3'
miRNA:   3'- gUGGGUuuAGGCCag-CGGCGCCG---------ACU- -5'
12401 3' -58.4 NC_003324.1 + 14894 0.66 0.528835
Target:  5'- cCGCCCAggaagcugccGAUgCCGGccgcguucuUCGCCGCGauuuccuGCUGAg -3'
miRNA:   3'- -GUGGGU----------UUA-GGCC---------AGCGGCGC-------CGACU- -5'
12401 3' -58.4 NC_003324.1 + 32658 0.67 0.519549
Target:  5'- aACgCCAAGUCCGGUU-UCG-GGCUGGa -3'
miRNA:   3'- gUG-GGUUUAGGCCAGcGGCgCCGACU- -5'
12401 3' -58.4 NC_003324.1 + 39272 0.69 0.376915
Target:  5'- uCGCCUAugaUCGGUugcCGCCGUGGCUGc -3'
miRNA:   3'- -GUGGGUuuaGGCCA---GCGGCGCCGACu -5'
12401 3' -58.4 NC_003324.1 + 2362 0.74 0.198637
Target:  5'- cCGCCCGcaggggcgGGUCgCGGUCGCUGCGGgaGu -3'
miRNA:   3'- -GUGGGU--------UUAG-GCCAGCGGCGCCgaCu -5'
12401 3' -58.4 NC_003324.1 + 51498 1.08 0.000644
Target:  5'- gCACCCAAAUCCGGUCGCCGCGGCUGAu -3'
miRNA:   3'- -GUGGGUUUAGGCCAGCGGCGCCGACU- -5'
12401 3' -58.4 NC_003324.1 + 49820 0.71 0.297627
Target:  5'- cCGCCUucGUUCaGGUCacagcucguGCCGCGGCUGGc -3'
miRNA:   3'- -GUGGGuuUAGG-CCAG---------CGGCGCCGACU- -5'
12401 3' -58.4 NC_003324.1 + 40588 0.7 0.343564
Target:  5'- uCGCCCGAugugguugugGUCCGGuUCGCUGgGGCc-- -3'
miRNA:   3'- -GUGGGUU----------UAGGCC-AGCGGCgCCGacu -5'
12401 3' -58.4 NC_003324.1 + 48625 0.7 0.351699
Target:  5'- gCGCCCGcAUCCGGcucCGCCGCaacaucaucGGCaUGAg -3'
miRNA:   3'- -GUGGGUuUAGGCCa--GCGGCG---------CCG-ACU- -5'
12401 3' -58.4 NC_003324.1 + 30053 0.69 0.385587
Target:  5'- cCGCCCAucacgccgCCGGUCGCgacaccggccgcUGCGGCUu- -3'
miRNA:   3'- -GUGGGUuua-----GGCCAGCG------------GCGCCGAcu -5'
12401 3' -58.4 NC_003324.1 + 3326 0.69 0.411469
Target:  5'- aGCCCGAAgaCGGUCGCCgacugcaGUGGCUc- -3'
miRNA:   3'- gUGGGUUUagGCCAGCGG-------CGCCGAcu -5'
12401 3' -58.4 NC_003324.1 + 21077 0.68 0.430869
Target:  5'- uGCCUug--UCGGcCGCCGCGGCg-- -3'
miRNA:   3'- gUGGGuuuaGGCCaGCGGCGCCGacu -5'
12401 3' -58.4 NC_003324.1 + 34178 0.67 0.519549
Target:  5'- -uCCC-AGUUCGGUCucgaaGCCGaGGCUGAc -3'
miRNA:   3'- guGGGuUUAGGCCAG-----CGGCgCCGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.