miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12401 5' -46.4 NC_003324.1 + 16930 0.66 0.995693
Target:  5'- gCGUCACCGAuagaucGGUUccGCCAgcaGAUcgCGUGu -3'
miRNA:   3'- -GCGGUGGCU------UCAA--UGGU---UUAaaGCAC- -5'
12401 5' -46.4 NC_003324.1 + 47254 0.66 0.993982
Target:  5'- aGCCgaGCCaAGGUcgcucaUGCCAAGaUUCGUGg -3'
miRNA:   3'- gCGG--UGGcUUCA------AUGGUUUaAAGCAC- -5'
12401 5' -46.4 NC_003324.1 + 31878 0.67 0.992941
Target:  5'- gGCuCGCCGAcGUUGCCGAAUa----- -3'
miRNA:   3'- gCG-GUGGCUuCAAUGGUUUAaagcac -5'
12401 5' -46.4 NC_003324.1 + 6908 0.67 0.991762
Target:  5'- uCGCCACCGcGGUcggUAUCAAggUUCa-- -3'
miRNA:   3'- -GCGGUGGCuUCA---AUGGUUuaAAGcac -5'
12401 5' -46.4 NC_003324.1 + 24860 0.67 0.987269
Target:  5'- aCGCCgguACCGAGGUcACCAccGAcaUCGUa -3'
miRNA:   3'- -GCGG---UGGCUUCAaUGGU--UUaaAGCAc -5'
12401 5' -46.4 NC_003324.1 + 2568 0.68 0.985413
Target:  5'- uCGCCGCuCGGAG-UGCCAcuGUUUCa-- -3'
miRNA:   3'- -GCGGUG-GCUUCaAUGGUu-UAAAGcac -5'
12401 5' -46.4 NC_003324.1 + 1740 0.68 0.985413
Target:  5'- cCGUCAgCGucagcAGgcgcagGCCGAGUUUCGUGa -3'
miRNA:   3'- -GCGGUgGCu----UCaa----UGGUUUAAAGCAC- -5'
12401 5' -46.4 NC_003324.1 + 3543 0.68 0.981089
Target:  5'- uGCCGCCa---UUACCGAAUcgCGUGa -3'
miRNA:   3'- gCGGUGGcuucAAUGGUUUAaaGCAC- -5'
12401 5' -46.4 NC_003324.1 + 31549 0.68 0.980609
Target:  5'- cCGCCAcgcgcgcCCGcGGUcucgauaUGCCAAggUUCGUGg -3'
miRNA:   3'- -GCGGU-------GGCuUCA-------AUGGUUuaAAGCAC- -5'
12401 5' -46.4 NC_003324.1 + 36661 0.68 0.97587
Target:  5'- uGCCGCCGGAGaUGCgAGAUgucUUGUc -3'
miRNA:   3'- gCGGUGGCUUCaAUGgUUUAa--AGCAc -5'
12401 5' -46.4 NC_003324.1 + 11292 0.69 0.969669
Target:  5'- uGCCACgGggGUcGCCucAUUUggCGUGa -3'
miRNA:   3'- gCGGUGgCuuCAaUGGuuUAAA--GCAC- -5'
12401 5' -46.4 NC_003324.1 + 49163 0.75 0.762919
Target:  5'- uCGCCACCGAAGgcACCA----UCGa- -3'
miRNA:   3'- -GCGGUGGCUUCaaUGGUuuaaAGCac -5'
12401 5' -46.4 NC_003324.1 + 51457 1.09 0.009585
Target:  5'- uCGCCACCGAAGUUACCAAAUUUCGUGc -3'
miRNA:   3'- -GCGGUGGCUUCAAUGGUUUAAAGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.