miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12402 5' -55.6 NC_003324.1 + 16222 0.66 0.723334
Target:  5'- gCGACgGGgcagGCCGUGCCgaCGCg---- -3'
miRNA:   3'- -GUUGgCCa---CGGCGCGGaaGCGaaacu -5'
12402 5' -55.6 NC_003324.1 + 21911 0.66 0.701906
Target:  5'- aAGCUGGaUGCCGCGCUgg-GCUUc-- -3'
miRNA:   3'- gUUGGCC-ACGGCGCGGaagCGAAacu -5'
12402 5' -55.6 NC_003324.1 + 24079 0.66 0.701906
Target:  5'- -cGCCGGUgcGCUGCGCCacggUgGCgcUGAu -3'
miRNA:   3'- guUGGCCA--CGGCGCGGa---AgCGaaACU- -5'
12402 5' -55.6 NC_003324.1 + 13073 0.66 0.691085
Target:  5'- gCAGCCGGUaccGCCGCcGCCgacCGCc---- -3'
miRNA:   3'- -GUUGGCCA---CGGCG-CGGaa-GCGaaacu -5'
12402 5' -55.6 NC_003324.1 + 7223 0.66 0.691085
Target:  5'- cCGACgUGGUGCCGauaCCUUCGCa---- -3'
miRNA:   3'- -GUUG-GCCACGGCgc-GGAAGCGaaacu -5'
12402 5' -55.6 NC_003324.1 + 13706 0.67 0.647342
Target:  5'- gGAUCGGaUGCCgaucgccugcGCGUCUUCGCg--GAa -3'
miRNA:   3'- gUUGGCC-ACGG----------CGCGGAAGCGaaaCU- -5'
12402 5' -55.6 NC_003324.1 + 55329 0.67 0.647342
Target:  5'- -cGCgCGGUGCCGUccGCCggcacgUCGgaUUGAu -3'
miRNA:   3'- guUG-GCCACGGCG--CGGa-----AGCgaAACU- -5'
12402 5' -55.6 NC_003324.1 + 28076 0.67 0.61435
Target:  5'- -uGCCGGauggGCuCGUGCCUUUGCgcucgGAg -3'
miRNA:   3'- guUGGCCa---CG-GCGCGGAAGCGaaa--CU- -5'
12402 5' -55.6 NC_003324.1 + 16144 0.68 0.592416
Target:  5'- gUAGCgGGgGCCGCGCCaggcaUCGCUg--- -3'
miRNA:   3'- -GUUGgCCaCGGCGCGGa----AGCGAaacu -5'
12402 5' -55.6 NC_003324.1 + 3172 0.68 0.592416
Target:  5'- -cACCGGcaCCGCGCCgaugaaugggaUUGCUUUGAu -3'
miRNA:   3'- guUGGCCacGGCGCGGa----------AGCGAAACU- -5'
12402 5' -55.6 NC_003324.1 + 54806 0.69 0.485999
Target:  5'- aGACC---GCCGCGCCgUUCGCggUGAg -3'
miRNA:   3'- gUUGGccaCGGCGCGG-AAGCGaaACU- -5'
12402 5' -55.6 NC_003324.1 + 20590 0.7 0.445949
Target:  5'- gGAuCCGGUGCUgugGCGCCgUCGCcagUGAc -3'
miRNA:   3'- gUU-GGCCACGG---CGCGGaAGCGaa-ACU- -5'
12402 5' -55.6 NC_003324.1 + 30144 0.71 0.40781
Target:  5'- gCGGCCGGUGUCGCGaCCggcggCGUgaUGGg -3'
miRNA:   3'- -GUUGGCCACGGCGC-GGaa---GCGaaACU- -5'
12402 5' -55.6 NC_003324.1 + 12161 0.71 0.38952
Target:  5'- aGACCGGUGCC-CGUCUUacCGgUUUGGc -3'
miRNA:   3'- gUUGGCCACGGcGCGGAA--GCgAAACU- -5'
12402 5' -55.6 NC_003324.1 + 21489 0.77 0.172663
Target:  5'- -uGCCGGaUGCCGCGCCcgUCGCgUUGc -3'
miRNA:   3'- guUGGCC-ACGGCGCGGa-AGCGaAACu -5'
12402 5' -55.6 NC_003324.1 + 54319 1.09 0.000981
Target:  5'- gCAACCGGUGCCGCGCCUUCGCUUUGAg -3'
miRNA:   3'- -GUUGGCCACGGCGCGGAAGCGAAACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.