miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12403 5' -55.6 NC_003324.1 + 55228 1.09 0.00076
Target:  5'- cAGCCAGAUGUAGCCGUUGCCGGCAACu -3'
miRNA:   3'- -UCGGUCUACAUCGGCAACGGCCGUUG- -5'
12403 5' -55.6 NC_003324.1 + 43022 0.74 0.254991
Target:  5'- cGGCCGGuaGUGgGGCCugcaUUGCCGGUAACg -3'
miRNA:   3'- -UCGGUC--UACaUCGGc---AACGGCCGUUG- -5'
12403 5' -55.6 NC_003324.1 + 2419 0.73 0.289951
Target:  5'- cGCCGauGAUGaAGCCGccgacGCCGGCGGCu -3'
miRNA:   3'- uCGGU--CUACaUCGGCaa---CGGCCGUUG- -5'
12403 5' -55.6 NC_003324.1 + 33453 0.73 0.297379
Target:  5'- uGGCCGGA-GUugcGCgCGgaGCCGGCAACc -3'
miRNA:   3'- -UCGGUCUaCAu--CG-GCaaCGGCCGUUG- -5'
12403 5' -55.6 NC_003324.1 + 25711 0.72 0.328562
Target:  5'- uGCguGAUGUccaaucagcAGCCG-UGCCGGCGcaGCa -3'
miRNA:   3'- uCGguCUACA---------UCGGCaACGGCCGU--UG- -5'
12403 5' -55.6 NC_003324.1 + 42553 0.71 0.362096
Target:  5'- uGCCAGucGUGcuuGCCGcaaugaccgUGCCGGCAGCc -3'
miRNA:   3'- uCGGUC--UACau-CGGCa--------ACGGCCGUUG- -5'
12403 5' -55.6 NC_003324.1 + 27165 0.71 0.397936
Target:  5'- cGCCAGAUGcagggAGCCGca-CCGGCcACa -3'
miRNA:   3'- uCGGUCUACa----UCGGCaacGGCCGuUG- -5'
12403 5' -55.6 NC_003324.1 + 44884 0.7 0.435973
Target:  5'- aAGUCAGcgGUAcGCCGggGCgCGGgGGCu -3'
miRNA:   3'- -UCGGUCuaCAU-CGGCaaCG-GCCgUUG- -5'
12403 5' -55.6 NC_003324.1 + 28143 0.69 0.496723
Target:  5'- aAGgCGGAUGcGGCCGaccuuguagUUGCCGGCuuCc -3'
miRNA:   3'- -UCgGUCUACaUCGGC---------AACGGCCGuuG- -5'
12403 5' -55.6 NC_003324.1 + 32120 0.68 0.528501
Target:  5'- cGGCC--GUG-AGCCGccGCCGGCAGa -3'
miRNA:   3'- -UCGGucUACaUCGGCaaCGGCCGUUg -5'
12403 5' -55.6 NC_003324.1 + 53720 0.68 0.528501
Target:  5'- cGCaCGGcgGUAGUucuuuUGgaGCCGGCGACg -3'
miRNA:   3'- uCG-GUCuaCAUCG-----GCaaCGGCCGUUG- -5'
12403 5' -55.6 NC_003324.1 + 31251 0.68 0.539263
Target:  5'- gGGCCuGAUGgcGCag--GCCgGGCAGCu -3'
miRNA:   3'- -UCGGuCUACauCGgcaaCGG-CCGUUG- -5'
12403 5' -55.6 NC_003324.1 + 32015 0.67 0.571961
Target:  5'- uAGCUugcucaacaGGaAUG-AGCUGUcUGCCGGCGGCg -3'
miRNA:   3'- -UCGG---------UC-UACaUCGGCA-ACGGCCGUUG- -5'
12403 5' -55.6 NC_003324.1 + 42761 0.67 0.582972
Target:  5'- cGCCAGcgGUuGCCGguccuggugGCCcGGCGAa -3'
miRNA:   3'- uCGGUCuaCAuCGGCaa-------CGG-CCGUUg -5'
12403 5' -55.6 NC_003324.1 + 53490 0.67 0.594024
Target:  5'- aAGCC-GA---GGCCGaaUGCCGGCGAUg -3'
miRNA:   3'- -UCGGuCUacaUCGGCa-ACGGCCGUUG- -5'
12403 5' -55.6 NC_003324.1 + 37458 0.67 0.594024
Target:  5'- cGCgGGAUGgAGCCGggGUCuccgggaugGGCGACu -3'
miRNA:   3'- uCGgUCUACaUCGGCaaCGG---------CCGUUG- -5'
12403 5' -55.6 NC_003324.1 + 51531 0.67 0.605109
Target:  5'- uGGCCGGuggcuUGggcuGCCGUcuUGC-GGCAACg -3'
miRNA:   3'- -UCGGUCu----ACau--CGGCA--ACGgCCGUUG- -5'
12403 5' -55.6 NC_003324.1 + 28439 0.67 0.605109
Target:  5'- uGUCGucUGUcguuccccAGCCGUUGCCGGCc-- -3'
miRNA:   3'- uCGGUcuACA--------UCGGCAACGGCCGuug -5'
12403 5' -55.6 NC_003324.1 + 17736 0.67 0.605109
Target:  5'- cAGCaGGuUGaAGCCGauugUGCCGGUGACa -3'
miRNA:   3'- -UCGgUCuACaUCGGCa---ACGGCCGUUG- -5'
12403 5' -55.6 NC_003324.1 + 41119 0.67 0.616218
Target:  5'- cGGUCccuccugggAGcgGUAGCUGUUGCgucaugCGGCAACc -3'
miRNA:   3'- -UCGG---------UCuaCAUCGGCAACG------GCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.