miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12404 3' -51.8 NC_003324.1 + 1774 0.66 0.9042
Target:  5'- cAAGgCGUGGagaucagcgugccagGACGAAC-CGCCGUCa -3'
miRNA:   3'- cUUCaGCACCa--------------CUGCUUGcGUGGUAG- -5'
12404 3' -51.8 NC_003324.1 + 23547 0.66 0.86555
Target:  5'- -cAG-CGUGGcGGCGGGCGCGCUc-- -3'
miRNA:   3'- cuUCaGCACCaCUGCUUGCGUGGuag -5'
12404 3' -51.8 NC_003324.1 + 13755 0.66 0.86555
Target:  5'- -cAGUCGUGGUGAagcuguCGAACaccacaaCGCCAUg -3'
miRNA:   3'- cuUCAGCACCACU------GCUUGc------GUGGUAg -5'
12404 3' -51.8 NC_003324.1 + 28659 0.67 0.857168
Target:  5'- --cGUCGUGGUGccauCGGcAUGCACCu-- -3'
miRNA:   3'- cuuCAGCACCACu---GCU-UGCGUGGuag -5'
12404 3' -51.8 NC_003324.1 + 5550 0.67 0.83058
Target:  5'- uGAG-CGUGG-GGCGGGCGaCGCCGc- -3'
miRNA:   3'- cUUCaGCACCaCUGCUUGC-GUGGUag -5'
12404 3' -51.8 NC_003324.1 + 22474 0.67 0.821268
Target:  5'- cGgcGagGUGGUGACGGAUugggagcuGuCGCCGUCg -3'
miRNA:   3'- -CuuCagCACCACUGCUUG--------C-GUGGUAG- -5'
12404 3' -51.8 NC_003324.1 + 8887 0.67 0.821268
Target:  5'- cGAGGUCGcauUGuUGGCGAACuGUacgGCCAUCa -3'
miRNA:   3'- -CUUCAGC---ACcACUGCUUG-CG---UGGUAG- -5'
12404 3' -51.8 NC_003324.1 + 39153 0.68 0.80203
Target:  5'- cGAcGUUGUcGGUGACGAucgGCACCuUCu -3'
miRNA:   3'- -CUuCAGCA-CCACUGCUug-CGUGGuAG- -5'
12404 3' -51.8 NC_003324.1 + 42039 0.68 0.792127
Target:  5'- aGAGUgGUGaacgGACGAugccACGUGCCAUCa -3'
miRNA:   3'- cUUCAgCACca--CUGCU----UGCGUGGUAG- -5'
12404 3' -51.8 NC_003324.1 + 23953 0.73 0.528259
Target:  5'- cGAAGUCGUucaagacGGUGGCGAGUGCAUCuuUCg -3'
miRNA:   3'- -CUUCAGCA-------CCACUGCUUGCGUGGu-AG- -5'
12404 3' -51.8 NC_003324.1 + 26009 0.73 0.518531
Target:  5'- cGAcuUCGgGGUGACuGAGCGCGCCAa- -3'
miRNA:   3'- -CUucAGCaCCACUG-CUUGCGUGGUag -5'
12404 3' -51.8 NC_003324.1 + 55822 0.74 0.480385
Target:  5'- ---cUCGUGGauuuugcggcagcagUGACGGACGCACCAg- -3'
miRNA:   3'- cuucAGCACC---------------ACUGCUUGCGUGGUag -5'
12404 3' -51.8 NC_003324.1 + 56703 1.11 0.001706
Target:  5'- cGAAGUCGUGGUGACGAACGCACCAUCa -3'
miRNA:   3'- -CUUCAGCACCACUGCUUGCGUGGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.