Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 12404 | 5' | -51.4 | NC_003324.1 | + | 30327 | 0.7 | 0.755275 |
|
Target: 5'- aUCGcCGAUggUGUCGGCGGUGGCgucgcucGGCGc -3' miRNA: 3'- -GGCaGUUAa-GCAGUCGCUAUCG-------CCGC- -5' |
|||||||
| 12404 | 5' | -51.4 | NC_003324.1 | + | 2609 | 0.7 | 0.745839 |
|
Target: 5'- uCCGUCGccuGUUCGUCGGUGGcgucaCGGCu -3' miRNA: 3'- -GGCAGU---UAAGCAGUCGCUauc--GCCGc -5' |
|||||||
| 12404 | 5' | -51.4 | NC_003324.1 | + | 41061 | 0.72 | 0.603137 |
|
Target: 5'- gCCuugCAGcgCGUCAccGUGAUAGCGGCGa -3' miRNA: 3'- -GGca-GUUaaGCAGU--CGCUAUCGCCGC- -5' |
|||||||
| 12404 | 5' | -51.4 | NC_003324.1 | + | 35448 | 0.72 | 0.636515 |
|
Target: 5'- uUCGUgCAGgaucaCGUCGGCGAUGuCGGCGa -3' miRNA: 3'- -GGCA-GUUaa---GCAGUCGCUAUcGCCGC- -5' |
|||||||
| 12404 | 5' | -51.4 | NC_003324.1 | + | 20785 | 0.72 | 0.603137 |
|
Target: 5'- aCCGcCGGaaCGUUGGCGA-GGCGGCGg -3' miRNA: 3'- -GGCaGUUaaGCAGUCGCUaUCGCCGC- -5' |
|||||||
| 12404 | 5' | -51.4 | NC_003324.1 | + | 9297 | 0.72 | 0.603137 |
|
Target: 5'- aCCGagAccUCGUCAuCGGUGGCGGCa -3' miRNA: 3'- -GGCagUuaAGCAGUcGCUAUCGCCGc -5' |
|||||||
| 12404 | 5' | -51.4 | NC_003324.1 | + | 3460 | 0.74 | 0.515868 |
|
Target: 5'- gCGUCAcgUCGauUCGGUaAUGGCGGCa -3' miRNA: 3'- gGCAGUuaAGC--AGUCGcUAUCGCCGc -5' |
|||||||
| 12404 | 5' | -51.4 | NC_003324.1 | + | 18352 | 0.77 | 0.378 |
|
Target: 5'- gCGUCGgccgAUUcCGUCAGCGGUcGCGGCu -3' miRNA: 3'- gGCAGU----UAA-GCAGUCGCUAuCGCCGc -5' |
|||||||
| 12404 | 5' | -51.4 | NC_003324.1 | + | 13180 | 0.79 | 0.267136 |
|
Target: 5'- aCCGUCAGcgaggcugCGUCGGCGGcggucGGCGGCGg -3' miRNA: 3'- -GGCAGUUaa------GCAGUCGCUa----UCGCCGC- -5' |
|||||||
| 12404 | 5' | -51.4 | NC_003324.1 | + | 56669 | 1.11 | 0.002303 |
|
Target: 5'- gCCGUCAAUUCGUCAGCGAUAGCGGCGu -3' miRNA: 3'- -GGCAGUUAAGCAGUCGCUAUCGCCGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home