Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 12404 | 5' | -51.4 | NC_003324.1 | + | 29137 | 0.68 | 0.834495 |
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Target: 5'- uCCGUCGAggaccUCGcCAGC-AUGGCGGa- -3' miRNA: 3'- -GGCAGUUa----AGCaGUCGcUAUCGCCgc -5' |
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| 12404 | 5' | -51.4 | NC_003324.1 | + | 12273 | 0.68 | 0.852071 |
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Target: 5'- aCCGUCcggcggcUCGUuccaguccgCAGaCGGUAGCGGCu -3' miRNA: 3'- -GGCAGuua----AGCA---------GUC-GCUAUCGCCGc -5' |
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| 12404 | 5' | -51.4 | NC_003324.1 | + | 7418 | 0.68 | 0.852071 |
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Target: 5'- aCCG-CA--UCGUCAGCGugcccucGGCGcGCGg -3' miRNA: 3'- -GGCaGUuaAGCAGUCGCua-----UCGC-CGC- -5' |
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| 12404 | 5' | -51.4 | NC_003324.1 | + | 20423 | 0.68 | 0.860509 |
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Target: 5'- aUGUCGAaccggcUUCuGUCGGCGAUGGCGa-- -3' miRNA: 3'- gGCAGUU------AAG-CAGUCGCUAUCGCcgc -5' |
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| 12404 | 5' | -51.4 | NC_003324.1 | + | 2506 | 0.68 | 0.863816 |
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Target: 5'- gCCGcCGg--CGUCGGCGGcuucaucaucggcguUGGCGGUGu -3' miRNA: 3'- -GGCaGUuaaGCAGUCGCU---------------AUCGCCGC- -5' |
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| 12404 | 5' | -51.4 | NC_003324.1 | + | 23461 | 0.67 | 0.891749 |
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Target: 5'- gCGUCAAagCGgagUGGCGAaAGUGGCu -3' miRNA: 3'- gGCAGUUaaGCa--GUCGCUaUCGCCGc -5' |
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| 12404 | 5' | -51.4 | NC_003324.1 | + | 52183 | 0.67 | 0.898899 |
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Target: 5'- cUCGUCAAaauaaUCGUCGGCGuccuUA-CGGCa -3' miRNA: 3'- -GGCAGUUa----AGCAGUCGCu---AUcGCCGc -5' |
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| 12404 | 5' | -51.4 | NC_003324.1 | + | 25652 | 0.66 | 0.924725 |
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Target: 5'- aCCGcCGAggacaaUC-UCGGCGAaGGCGGCc -3' miRNA: 3'- -GGCaGUUa-----AGcAGUCGCUaUCGCCGc -5' |
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| 12404 | 5' | -51.4 | NC_003324.1 | + | 30616 | 0.66 | 0.930478 |
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Target: 5'- -aG-CGcgUCG-CAGCGGcAGCGGCa -3' miRNA: 3'- ggCaGUuaAGCaGUCGCUaUCGCCGc -5' |
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| 12404 | 5' | -51.4 | NC_003324.1 | + | 3396 | 0.66 | 0.930478 |
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Target: 5'- aCCGUC--UUCGggcugCAGUGAaGGCGGa- -3' miRNA: 3'- -GGCAGuuAAGCa----GUCGCUaUCGCCgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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