Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12405 | 3' | -58.9 | NC_003324.1 | + | 14685 | 0.7 | 0.3496 |
Target: 5'- uCCGGCcgccacgCUACCgCCUGCgCCGCcggCCg -3' miRNA: 3'- -GGCCGa------GGUGGaGGACG-GGCGaaaGG- -5' |
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12405 | 3' | -58.9 | NC_003324.1 | + | 46450 | 0.69 | 0.391693 |
Target: 5'- uUGGCUgUAuCCUgCUuaCCGCUUUCCa -3' miRNA: 3'- gGCCGAgGU-GGAgGAcgGGCGAAAGG- -5' |
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12405 | 3' | -58.9 | NC_003324.1 | + | 15645 | 0.69 | 0.391693 |
Target: 5'- gUCGGC-CCACUUCUgaacccgGUCggCGCUUUCCa -3' miRNA: 3'- -GGCCGaGGUGGAGGa------CGG--GCGAAAGG- -5' |
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12405 | 3' | -58.9 | NC_003324.1 | + | 55122 | 0.69 | 0.391693 |
Target: 5'- gCGGCagcccagccgUCCGCCUugCCUGCCCGgcgcgacaccuCUUUCg -3' miRNA: 3'- gGCCG----------AGGUGGA--GGACGGGC-----------GAAAGg -5' |
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12405 | 3' | -58.9 | NC_003324.1 | + | 9957 | 0.68 | 0.432292 |
Target: 5'- aCCGGCguaaccucguauccgCCACaCcccgcccaaaacgguUCCUGCgCCGCUcaUUCCg -3' miRNA: 3'- -GGCCGa--------------GGUG-G---------------AGGACG-GGCGA--AAGG- -5' |
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12405 | 3' | -58.9 | NC_003324.1 | + | 52168 | 0.68 | 0.436953 |
Target: 5'- gUCGGCgUCCuuacggcagGCCUCgUGCCaCGCgaagUUCUg -3' miRNA: 3'- -GGCCG-AGG---------UGGAGgACGG-GCGa---AAGG- -5' |
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12405 | 3' | -58.9 | NC_003324.1 | + | 53812 | 0.67 | 0.475242 |
Target: 5'- gCGGcCUCCGgUUCCUGUacgcgCUGCUUcaUCCa -3' miRNA: 3'- gGCC-GAGGUgGAGGACG-----GGCGAA--AGG- -5' |
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12405 | 3' | -58.9 | NC_003324.1 | + | 30043 | 0.66 | 0.526344 |
Target: 5'- cCCGGCUgCCGCCgcuacgcaggacgccCCUcGCCCGU---CCg -3' miRNA: 3'- -GGCCGA-GGUGGa--------------GGA-CGGGCGaaaGG- -5' |
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12405 | 3' | -58.9 | NC_003324.1 | + | 37530 | 0.66 | 0.545916 |
Target: 5'- cCCGGCUCCAUCccgCgCUGUgCGCg---- -3' miRNA: 3'- -GGCCGAGGUGGa--G-GACGgGCGaaagg -5' |
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12405 | 3' | -58.9 | NC_003324.1 | + | 45917 | 0.66 | 0.550067 |
Target: 5'- gCCGuuUCCACCUCaCUGUucucgCCGCagccccucaccuuccUUUCCg -3' miRNA: 3'- -GGCcgAGGUGGAG-GACG-----GGCG---------------AAAGG- -5' |
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12405 | 3' | -58.9 | NC_003324.1 | + | 56849 | 1.13 | 0.000262 |
Target: 5'- aCCGGCUCCACCUCCUGCCCGCUUUCCu -3' miRNA: 3'- -GGCCGAGGUGGAGGACGGGCGAAAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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