miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12405 3' -58.9 NC_003324.1 + 46450 0.69 0.391693
Target:  5'- uUGGCUgUAuCCUgCUuaCCGCUUUCCa -3'
miRNA:   3'- gGCCGAgGU-GGAgGAcgGGCGAAAGG- -5'
12405 3' -58.9 NC_003324.1 + 55122 0.69 0.391693
Target:  5'- gCGGCagcccagccgUCCGCCUugCCUGCCCGgcgcgacaccuCUUUCg -3'
miRNA:   3'- gGCCG----------AGGUGGA--GGACGGGC-----------GAAAGg -5'
12405 3' -58.9 NC_003324.1 + 25548 0.69 0.357756
Target:  5'- cCCGGaauUUCGCCUUCUGgCCGCcUUCg -3'
miRNA:   3'- -GGCCg--AGGUGGAGGACgGGCGaAAGg -5'
12405 3' -58.9 NC_003324.1 + 14685 0.7 0.3496
Target:  5'- uCCGGCcgccacgCUACCgCCUGCgCCGCcggCCg -3'
miRNA:   3'- -GGCCGa------GGUGGaGGACG-GGCGaaaGG- -5'
12405 3' -58.9 NC_003324.1 + 22047 0.7 0.3496
Target:  5'- gCCGGCUCCaaggugcaucgcGCCgCCgacgagaugGCCCGCa-UCCa -3'
miRNA:   3'- -GGCCGAGG------------UGGaGGa--------CGGGCGaaAGG- -5'
12405 3' -58.9 NC_003324.1 + 49193 0.7 0.3496
Target:  5'- aUCGGCUCCucgauCUUCCUGCCgaCGa--UCCg -3'
miRNA:   3'- -GGCCGAGGu----GGAGGACGG--GCgaaAGG- -5'
12405 3' -58.9 NC_003324.1 + 50041 0.7 0.325165
Target:  5'- aUCGGCUCCGgUUUCcGCCCGUaucucgcgggcggUUUCCc -3'
miRNA:   3'- -GGCCGAGGUgGAGGaCGGGCG-------------AAAGG- -5'
12405 3' -58.9 NC_003324.1 + 14874 0.71 0.288478
Target:  5'- gCCGGCcgcguucUUCGCCgcgauuUCCUGCUgaGCUUUCCa -3'
miRNA:   3'- -GGCCG-------AGGUGG------AGGACGGg-CGAAAGG- -5'
12405 3' -58.9 NC_003324.1 + 5804 0.75 0.152676
Target:  5'- cUCGuGCaCCGCg-CCUGCCUGCUUUCCg -3'
miRNA:   3'- -GGC-CGaGGUGgaGGACGGGCGAAAGG- -5'
12405 3' -58.9 NC_003324.1 + 14173 0.76 0.133568
Target:  5'- gCCGGuCUCCGCUUCCUugaGCgCUGCUUUgCCg -3'
miRNA:   3'- -GGCC-GAGGUGGAGGA---CG-GGCGAAA-GG- -5'
12405 3' -58.9 NC_003324.1 + 56849 1.13 0.000262
Target:  5'- aCCGGCUCCACCUCCUGCCCGCUUUCCu -3'
miRNA:   3'- -GGCCGAGGUGGAGGACGGGCGAAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.