miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12405 5' -52.2 NC_003324.1 + 7772 0.66 0.873267
Target:  5'- aGGGAggcGCGauCGCAACGGGCUuugccgccgcggcGAACa -3'
miRNA:   3'- aCCCUaa-CGCc-GCGUUGCUUGA-------------CUUG- -5'
12405 5' -52.2 NC_003324.1 + 31760 0.66 0.857511
Target:  5'- cGGGGaUGCGGC-CGAucuCGGAUgGAACg -3'
miRNA:   3'- aCCCUaACGCCGcGUU---GCUUGaCUUG- -5'
12405 5' -52.2 NC_003324.1 + 27493 0.67 0.830831
Target:  5'- aGGGAUgGCGuGaCGCAAggcCGGGCUuGAACc -3'
miRNA:   3'- aCCCUAaCGC-C-GCGUU---GCUUGA-CUUG- -5'
12405 5' -52.2 NC_003324.1 + 29620 0.67 0.830831
Target:  5'- cGGGAggcucUGCcugcuucuGGCGCAACGccgccgcCUGAGCc -3'
miRNA:   3'- aCCCUa----ACG--------CCGCGUUGCuu-----GACUUG- -5'
12405 5' -52.2 NC_003324.1 + 35035 0.67 0.828049
Target:  5'- cGGGcgaugccgaugaucAggGCGGCGCAGaugaaGAGCagGAGCg -3'
miRNA:   3'- aCCC--------------UaaCGCCGCGUUg----CUUGa-CUUG- -5'
12405 5' -52.2 NC_003324.1 + 23771 0.67 0.821483
Target:  5'- cGGGGUccgauucgGCGGCGCGuucggccucgGCGAGCUu--- -3'
miRNA:   3'- aCCCUAa-------CGCCGCGU----------UGCUUGAcuug -5'
12405 5' -52.2 NC_003324.1 + 36243 0.67 0.811925
Target:  5'- -aGGucgGCGGCGUGACGGAUgaGAACc -3'
miRNA:   3'- acCCuaaCGCCGCGUUGCUUGa-CUUG- -5'
12405 5' -52.2 NC_003324.1 + 8235 0.67 0.802168
Target:  5'- cGGGcgUcacgaagcugacGCGGCGUuugccuGCGAGCgGGACa -3'
miRNA:   3'- aCCCuaA------------CGCCGCGu-----UGCUUGaCUUG- -5'
12405 5' -52.2 NC_003324.1 + 25850 0.68 0.782102
Target:  5'- -uGGA-UGCGGCGCGugGug--GAGCg -3'
miRNA:   3'- acCCUaACGCCGCGUugCuugaCUUG- -5'
12405 5' -52.2 NC_003324.1 + 18831 0.68 0.750802
Target:  5'- gUGGGcuc-CGGCgucaGCAACGAGCUGAu- -3'
miRNA:   3'- -ACCCuaacGCCG----CGUUGCUUGACUug -5'
12405 5' -52.2 NC_003324.1 + 37036 0.69 0.718355
Target:  5'- uUGGGAcagcaCGGCGac-CGAGCUGGACc -3'
miRNA:   3'- -ACCCUaac--GCCGCguuGCUUGACUUG- -5'
12405 5' -52.2 NC_003324.1 + 27465 0.69 0.707343
Target:  5'- cGGGA-UGCGGCGauGCGAACUu--- -3'
miRNA:   3'- aCCCUaACGCCGCguUGCUUGAcuug -5'
12405 5' -52.2 NC_003324.1 + 28821 0.71 0.606157
Target:  5'- aUGcGGAgcGCGGCGCGG-GAACUgcaGAGCa -3'
miRNA:   3'- -AC-CCUaaCGCCGCGUUgCUUGA---CUUG- -5'
12405 5' -52.2 NC_003324.1 + 22237 0.71 0.565777
Target:  5'- cGGGA--GCGGCaacgucuugccgaucGCGGCGAGCUGcGCc -3'
miRNA:   3'- aCCCUaaCGCCG---------------CGUUGCUUGACuUG- -5'
12405 5' -52.2 NC_003324.1 + 12905 0.73 0.485462
Target:  5'- cUGcGGAgccccUUGCGGCGCGuCGAaacGCUGGAUg -3'
miRNA:   3'- -AC-CCU-----AACGCCGCGUuGCU---UGACUUG- -5'
12405 5' -52.2 NC_003324.1 + 7015 0.85 0.091382
Target:  5'- uUGGGAUUGCuGGUGCccuCGGACUGAACc -3'
miRNA:   3'- -ACCCUAACG-CCGCGuu-GCUUGACUUG- -5'
12405 5' -52.2 NC_003324.1 + 56810 1.11 0.00142
Target:  5'- gUGGGAUUGCGGCGCAACGAACUGAACg -3'
miRNA:   3'- -ACCCUAACGCCGCGUUGCUUGACUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.