miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12406 3' -57.1 NC_003324.1 + 2623 0.66 0.613771
Target:  5'- ----cGugCCGUCUGCCguccGUCGCcuguucgucgguGGCg -3'
miRNA:   3'- ucauaCugGGCAGACGGa---CGGCG------------UCG- -5'
12406 3' -57.1 NC_003324.1 + 12114 0.66 0.613771
Target:  5'- --cGUGAUggaCCGUCcGCCcggUGuuGCAGCa -3'
miRNA:   3'- ucaUACUG---GGCAGaCGG---ACggCGUCG- -5'
12406 3' -57.1 NC_003324.1 + 21076 0.66 0.602878
Target:  5'- ---cUGcCuuGUCgGCC-GCCGCGGCg -3'
miRNA:   3'- ucauACuGggCAGaCGGaCGGCGUCG- -5'
12406 3' -57.1 NC_003324.1 + 52377 0.66 0.59201
Target:  5'- --cAUGcAUCCGUCUG---GCCGCGGCa -3'
miRNA:   3'- ucaUAC-UGGGCAGACggaCGGCGUCG- -5'
12406 3' -57.1 NC_003324.1 + 54510 0.66 0.581176
Target:  5'- cGGcUAUGACCCaGUCgagGCCcgGCaGCGGUc -3'
miRNA:   3'- -UC-AUACUGGG-CAGa--CGGa-CGgCGUCG- -5'
12406 3' -57.1 NC_003324.1 + 34985 0.67 0.538331
Target:  5'- uGGUGUccgaGCCugcagCGUUUGCguuugCUGCCGCAGCa -3'
miRNA:   3'- -UCAUAc---UGG-----GCAGACG-----GACGGCGUCG- -5'
12406 3' -57.1 NC_003324.1 + 47633 0.67 0.538331
Target:  5'- ----cGGCCCucGUCauccaccaugGCaCUGCCGCAGCu -3'
miRNA:   3'- ucauaCUGGG--CAGa---------CG-GACGGCGUCG- -5'
12406 3' -57.1 NC_003324.1 + 30523 0.67 0.52778
Target:  5'- cGUGgcGACCUucgCUGCCgcUGCCGCuGCg -3'
miRNA:   3'- uCAUa-CUGGGca-GACGG--ACGGCGuCG- -5'
12406 3' -57.1 NC_003324.1 + 16309 0.67 0.517307
Target:  5'- ---cUGGCCgCGUCggcacgGCCUGCCccgucGCGGUa -3'
miRNA:   3'- ucauACUGG-GCAGa-----CGGACGG-----CGUCG- -5'
12406 3' -57.1 NC_003324.1 + 54153 0.67 0.517307
Target:  5'- --gAUGucgaGCCgGUCgGCCgauuccGCCGCAGCg -3'
miRNA:   3'- ucaUAC----UGGgCAGaCGGa-----CGGCGUCG- -5'
12406 3' -57.1 NC_003324.1 + 10733 0.68 0.506918
Target:  5'- cGGU-UGACCaugGUCUcGCCaGUCGUAGCg -3'
miRNA:   3'- -UCAuACUGGg--CAGA-CGGaCGGCGUCG- -5'
12406 3' -57.1 NC_003324.1 + 26867 0.68 0.486416
Target:  5'- ----cGGCCgCGUCUGCCaaGCCGaAGCu -3'
miRNA:   3'- ucauaCUGG-GCAGACGGa-CGGCgUCG- -5'
12406 3' -57.1 NC_003324.1 + 22599 0.68 0.486416
Target:  5'- ----cGGCCUuuuggCUGCCUGCCGCGuuGCc -3'
miRNA:   3'- ucauaCUGGGca---GACGGACGGCGU--CG- -5'
12406 3' -57.1 NC_003324.1 + 51380 0.68 0.476313
Target:  5'- cGUAUGA-UCGUgacGCCUGCCgGCGGCu -3'
miRNA:   3'- uCAUACUgGGCAga-CGGACGG-CGUCG- -5'
12406 3' -57.1 NC_003324.1 + 10968 0.69 0.436996
Target:  5'- cAGUuaacGGCCCGUCguuuaugucgGCCUGCuCGUAGa -3'
miRNA:   3'- -UCAua--CUGGGCAGa---------CGGACG-GCGUCg -5'
12406 3' -57.1 NC_003324.1 + 25593 0.7 0.37295
Target:  5'- cGGUgAUGACauaGUCUGUCgGCCGCuGCu -3'
miRNA:   3'- -UCA-UACUGgg-CAGACGGaCGGCGuCG- -5'
12406 3' -57.1 NC_003324.1 + 30046 0.7 0.364335
Target:  5'- ----gGACCCGgCUGCC-GCCGCuacGCa -3'
miRNA:   3'- ucauaCUGGGCaGACGGaCGGCGu--CG- -5'
12406 3' -57.1 NC_003324.1 + 32028 0.76 0.16081
Target:  5'- aGGaAUGAgCUGUCUGCCgGCgGCGGCu -3'
miRNA:   3'- -UCaUACUgGGCAGACGGaCGgCGUCG- -5'
12406 3' -57.1 NC_003324.1 + 44 1.1 0.000507
Target:  5'- aAGUAUGACCCGUCUGCCUGCCGCAGCc -3'
miRNA:   3'- -UCAUACUGGGCAGACGGACGGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.